YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MLO7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRSRCRRS LLWFLVFHGG ATATGAPSGG KELSQTPTWA VAVVCTFLIL ISHLLEKGLQ  60
   61 RLANWLWKKH KNSLLEALEK IKAELMILGF ISLLLTFGEP YILKICVPRK AALSMLPCLS 120
  121 EDTVLFQKLA PSSLSRHLLA AGDTSINCKQ GSEPLITLKG LHQLHILLFF LAIFHIVYSL 180
  181 ITMMLSRLKI RGWKKWEQET LSNDYEFSID HSRLRLTHET SFVREHTSFW TTTPFFFYVG 240
  241 CFFRQFFVSV ERTDYLTLRH GFISAHLAPG RKFNFQRYIK RSLEDDFKLV VGISPVLWAS 300
  301 FVIFLLFNVN GWRTLFWASI PPLLIILAVG TKLQAIMATM ALEIVETHAV VQGMPLVQGS 360
  361 DRYFWFDCPQ LLLHLIHFAL FQNAFQITHF FWIWYSFGLK SCFHKDFNLV VSKLFLCLGA 420
  421 LILCSYITLP LYALVTQMGS HMKKAVFDEQ MAKALKKWHK DIKLKKGKAR KLPSKTLGVS 480
  481 ESFSLSSSSS ATTLHRSKTT GHSSNIIYYK QEDEEDEMSD LEAGAEDAID RIQQQEMQFH 540
  541 NS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	29	0.84
Non-Cytoplasmic	30	37	0.79
Transmembrane Helix	38	55	0.93
Cytoplasmic	56	80	0.84
Transmembrane Helix	81	103	0.75
Non-Cytoplasmic	104	163	0.93
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	286	0.79
Transmembrane Helix	287	307	0.92
Non-Cytoplasmic	308	314	0.69
Transmembrane Helix	315	336	0.81
Cytoplasmic	337	370	0.74
Transmembrane Helix	371	393	0.83
Non-Cytoplasmic	394	413	0.68
Transmembrane Helix	414	435	0.92
Cytoplasmic	436	542	0.77