YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MLO6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQVKEKTL EETSTWAVAV VCFVLLLISI VIEKLIHKIG SWFKKKNKKA LYEALEKVKA  60
   61 ELMLMGFISL LLTIGQGYIS NICIPKNIAA SMHPCSASEE ARKYGKKDVP KEDEEENLRR 120
  121 KLLQLVDSLI PRRSLATKGY DKCAEKGKVA FVSAYGMHQL HIFIFVLAVC HVIYCIVTYA 180
  181 LGKTKMRRWK KWEEETKTIE YQYSHDPERF RFARDTSFGR RHLSFWSKST ITLWIVCFFR 240
  241 QFFRSVTKVD YLTLRHGFIM AHLAPGSDAR FDFRKYIQRS LEEDFKTIVE INPVIWFIAV 300
  301 LFLLTNTNGL NSYLWLPFIP FIVILIVGTK LQVIITKLGL RIQEKGDVVK GTPLVQPGDH 360
  361 FFWFGRPRFI LFLIHLVLFT NAFQLAFFVW STYEFGLKNC FHESRVDVII RISIGLLVQI 420
  421 LCSYVTLPLY ALVTQMGSKM KPTVFNERVA TALKSWHHTA KKNIKHGRTS ESTTPFSSRP 480
  481 TTPTHGSSPI HLLRNAPHKR SRSVDESFAN SFSPRNSDFD SWDPESQHET AETSNSNHRS 540
  541 RFGEEESEKK FVSSSVELPP GPGQIRTQHE ISTISLRDFS FKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.91
Transmembrane Helix	15	37	0.90
Cytoplasmic	38	57	0.92
Transmembrane Helix	58	79	0.83
Non-Cytoplasmic	80	159	0.97
Transmembrane Helix	160	182	0.94
Cytoplasmic	183	286	0.72
Transmembrane Helix	287	305	0.87
Non-Cytoplasmic	306	312	0.76
Transmembrane Helix	313	334	0.90
Cytoplasmic	335	368	0.94
Transmembrane Helix	369	390	0.91
Non-Cytoplasmic	391	408	0.90
Transmembrane Helix	409	432	0.88
Cytoplasmic	433	583	0.94