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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPDL4_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.58
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG  60
   61 LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD VKMMNASNIQ DVYPKRKTSY 120
  121 LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL 180
  181 NVQHDAFYAQ HNLSMSSFLL SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK 240
  241 DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV 300
  301 YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS 360
  361 SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL QMSSDGIPFC LSSINLGEST 420
  421 NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG 480
  481 KFVSLSDFLN LAKNSSSLTG VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR 540
  541 VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE 600
  601 SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF 660
  661 PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP PAEAPSPVFT DADVTEPPLP 720
  721 PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle