YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITEILALF MVLVPVSLVI VAMFGYDQGN GFVQASRFIT MEPNVTSSSD DSSLVQRDQE  60
   61 QKDSVDMSLL GGLLVSGFKK ESCLSRYQSY LYRKASPYKP SLHLLSKLRA YEELHKRCGP 120
  121 GTRQYTNAER LLKQKQTGEM ESQGCKYVVW MSFSGLGNRI ISIASVFLYA MLTDRVLLVE 180
  181 GGEQFADLFC EPFLDTTWLL PKDFTLASQF SGFGQNSAHC HGDMLKRKLI NESSVSSLSH 240
  241 LYLHLAHDYN EHDKMFFCEE DQNLLKNVPW LIMRTNNFFA PSLFLISSFE EELGMMFPEK 300
  301 GTVFHHLGRY LFHPSNQVWG LITRYYQAYL AKADERIGLQ IRVFDEKSGV SPRVTKQIIS 360
  361 CVQNENLLPR LSKGEEQYKQ PSEEELKLKS VLVTSLTTGY FEILKTMYWE NPTVTRDVIG 420
  421 IHQPSHEGHQ QTEKLMHNRK AWAEMYLLSL TDKLVISAWS TFGYVAQGLG GLRAWILYKQ 480
  481 ENQTNPNPPC GRAMSPDPCF HAPPYYDCKA KKGTDTGNVV PHVRHCEDIS WGLKLVDNF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.52
Transmembrane Helix	7	26	0.56
Non-Cytoplasmic	27	539	0.96