YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUT13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMRYLNAMA ALLMMFFTLL ILSFTGILEF PSASTSMEHS IDPEPKLSDS TSDPFSDVLV  60
   61 AYKKWDFEVG CARFRENHKD AILGNVSSGS LQEFGCGKLK MKHVKVLVKG WTWIPDNLEN 120
  121 LYSCRCGMTC LWTKSSVLAD SPDALLFETT TPPLQRRVGD PLRVYMELEA GRKRSGREDI 180
  181 FISYHAKDDV QTTYAGSLFH NNRNYHISPH KNNDVLVYWS SSRCLPHRDR LAKSLLDLIP 240
  241 HHSFGKCLNN VGGLDSALSM YPECVAEHNA EAKWYDHLHC AMSHYKFVLA IENTAVESYV 300
  301 TEKLFYALDS GSVPIYFGAS NVQDFVPPHS VIDGSKFGSM QELAAYVKRL GDDPVAYSEY 360
  361 HAWRRCGLMG NYGKTRAVSL DTLPCRLCEE ISRRGGKNAG V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.60
Transmembrane Helix	8	28	0.63
Non-Cytoplasmic	29	401	0.98