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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EMS1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLTALFLF LFFSFSSSAI VDLSSETTSL ISFKRSLENP SLLSSWNVSS SASHCDWVGV  60
   61 TCLLGRVNSL SLPSLSLRGQ IPKEISSLKN LRELCLAGNQ FSGKIPPEIW NLKHLQTLDL 120
  121 SGNSLTGLLP RLLSELPQLL YLDLSDNHFS GSLPPSFFIS LPALSSLDVS NNSLSGEIPP 180
  181 EIGKLSNLSN LYMGLNSFSG QIPSEIGNIS LLKNFAAPSC FFNGPLPKEI SKLKHLAKLD 240
  241 LSYNPLKCSI PKSFGELHNL SILNLVSAEL IGLIPPELGN CKSLKSLMLS FNSLSGPLPL 300
  301 ELSEIPLLTF SAERNQLSGS LPSWMGKWKV LDSLLLANNR FSGEIPHEIE DCPMLKHLSL 360
  361 ASNLLSGSIP RELCGSGSLE AIDLSGNLLS GTIEEVFDGC SSLGELLLTN NQINGSIPED 420
  421 LWKLPLMALD LDSNNFTGEI PKSLWKSTNL MEFTASYNRL EGYLPAEIGN AASLKRLVLS 480
  481 DNQLTGEIPR EIGKLTSLSV LNLNANMFQG KIPVELGDCT SLTTLDLGSN NLQGQIPDKI 540
  541 TALAQLQCLV LSYNNLSGSI PSKPSAYFHQ IEMPDLSFLQ HHGIFDLSYN RLSGPIPEEL 600
  601 GECLVLVEIS LSNNHLSGEI PASLSRLTNL TILDLSGNAL TGSIPKEMGN SLKLQGLNLA 660
  661 NNQLNGHIPE SFGLLGSLVK LNLTKNKLDG PVPASLGNLK ELTHMDLSFN NLSGELSSEL 720
  721 STMEKLVGLY IEQNKFTGEI PSELGNLTQL EYLDVSENLL SGEIPTKICG LPNLEFLNLA 780
  781 KNNLRGEVPS DGVCQDPSKA LLSGNKELCG RVVGSDCKIE GTKLRSAWGI AGLMLGFTII 840
  841 VFVFVFSLRR WAMTKRVKQR DDPERMEESR LKGFVDQNLY FLSGSRSREP LSINIAMFEQ 900
  901 PLLKVRLGDI VEATDHFSKK NIIGDGGFGT VYKACLPGEK TVAVKKLSEA KTQGNREFMA 960
  961 EMETLGKVKH PNLVSLLGYC SFSEEKLLVY EYMVNGSLDH WLRNQTGMLE VLDWSKRLKI1020
 1021 AVGAARGLAF LHHGFIPHII HRDIKASNIL LDGDFEPKVA DFGLARLISA CESHVSTVIA1080
 1081 GTFGYIPPEY GQSARATTKG DVYSFGVILL ELVTGKEPTG PDFKESEGGN LVGWAIQKIN1140
 1141 QGKAVDVIDP LLVSVALKNS QLRLLQIAML CLAETPAKRP NMLDVLKALK EI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle