YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG11_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTNVCLWT LLAFMLTWTV FYVTNRGKKA TQLADAVVEE REDGATDVII VGAGVGGSAL  60
   61 AYALAKDGRR VHVIERDLRE PERIMGEFMQ PGGRLMLSKL GLEDCLEGID AQKATGMTVY 120
  121 KDGKEAVASF PVDNNNFPFD PSARSFHNGR FVQRLRQKAS SLPNVRLEEG TVKSLIEEKG 180
  181 VIKGVTYKNS AGEETTALAP LTVVCDGCYS NLRRSLNDNN AEVLSYQVGF ISKNCQLEEP 240
  241 EKLKLIMSKP SFTMLYQISS TDVRCVFEVL PNNIPSISNG EMATFVKNTI APQVPLKLRK 300
  301 IFLKGIDEGE HIKAMPTKKM TATLSEKKGV ILLGDAFNMR HPAIASGMMV LLSDILILRR 360
  361 LLQPLSNLGN AQKISQVIKS FYDIRKPMSA TVNTLGNAFS QVLVASTDEA KEAMRQGCYD 420
  421 YLSSGGFRTS GMMALLGGMN PRPISLIYHL CAITLSSIGH LLSPFPSPLR IWHSLRLFGL 480
  481 AMKMLVPHLK AEGVSQMLFP VNAAAYSKSY MAATAL

Type	Start	End	Confidence
Signal Peptide	1	19	0.75
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	445	0.77
Transmembrane Helix	446	466	0.68
Cytoplasmic	467	516	0.42