YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2565436
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTTSCSLL LHSPPSSQLS NSTSFFNLSS SRSSPVSLYP IRSKRYFRIL SKLPLNDNNG  60
   61 DDDGDTLLLT PFSAVKPFFL LCTSVALSFS LFAASPAVES ASAFVVSTPK KLQTDELATV 120
  121 RLFQENTPSV VYITNLAVRQ DAFTLDVLEV PQGSGSGFVW DKQGHIVTNY HVIRGASDLR 180
  181 VTLADQTTFD AKVVGFDQDK DVAVLRIDAP KNKLRPIPVG VSADLLVGQK VFAIGNPFGL 240
  241 DHTLTTGVIS GLRREISSAA TGRPIQDVIQ TDAAINPGNS GGPLLDSSGT LIGINTAIYS 300
  301 PSGASSGVGF SIPVDTVGGI VDQLVRFGKV TRPILGIKFA PDQSVEQLGV SGVLLLDAPP 360
  361 SGPAGKAGLQ STKRDGYGRL ILGDIITSVN GTKVSNGSDL YRILDQCKVG DEVTVQVLRG 420
  421 DHKEKISVTL EPKPDES

Type	Start	End	Confidence
Signal Peptide	1	19	0.86
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	437	0.98