YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCUP2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILQVSTSS LSSSTLLSIS PRKSLSSTKS CRIVRCSVEG TTVTERKVSA TSEPLLLRAV  60
   61 KGEVVDRPPV WLMRQAGRYM KSYQTLCEKY PSFRDRSENA DLVVEISLQP WKVFKPDGVI 120
  121 LFSDILTPLS GMNIPFDIVK GKGPIIFNPP QSAADVAQVR EFVPEESVPY VGEALRRLRN 180
  181 EVNNEAAVLG FVGAPFTLSS YVIEGGSSKN FTQIKRLAFS QPKVLHALLQ KFTTSMITYI 240
  241 RYQADSGAQA VQIFDSWATE LSPVDFEEFS LPYLKQIVEA VKQTHPNLPL ILYASGSGGL 300
  301 LERLARTGVD VVSLDWTVDM AEGRDRLGRD IAVQGNVDPG VLFGSKEFIT SRIHDTVKKA 360
  361 GRDKHILNLG HGIKVGTPEE NVAHFFEVAQ EIRY

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	394	0.99