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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CKX3_ARATH
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYNLRSQV RLIAITIVII ITLSTPITTN TSPQPWNILS HNEFAGKLTS SSSSVESAAT  60
   61 DFGHVTKIFP SAVLIPSSVE DITDLIKLSF DSQLSFPLAA RGHGHSHRGQ ASAKDGVVVN 120
  121 MRSMVNRDRG IKVSRTCLYV DVDAAWLWIE VLNKTLELGL TPVSWTDYLY LTVGGTLSNG 180
  181 GISGQTFRYG PQITNVLEMD VITGKGEIAT CSKDMNSDLF FAVLGGLGQF GIITRARIKL 240
  241 EVAPKRAKWL RFLYIDFSEF TRDQERVISK TDGVDFLEGS IMVDHGPPDN WRSTYYPPSD 300
  301 HLRIASMVKR HRVIYCLEVV KYYDETSQYT VNEEMEELSD SLNHVRGFMY EKDVTYMDFL 360
  361 NRVRTGELNL KSKGQWDVPH PWLNLFVPKT QISKFDDGVF KGIILRNNIT SGPVLVYPMN 420
  421 RNKWNDRMSA AIPEEDVFYA VGFLRSAGFD NWEAFDQENM EILKFCEDAN MGVIQYLPYH 480
  481 SSQEGWVRHF GPRWNIFVER KYKYDPKMIL SPGQNIFQKI NSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle