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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNG20_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHNENDDI PMLPISDPSS RTRARAFTSR SRSVSLSNPT SSIEGFDTST VVLGYTGPLR  60
   61 TQRRPPLVQM SGPLTSTRKH EPLFLPHPSS DSVGVSSQPE RYPSFAALEH KNSSEDEFVL 120
  121 KHANLLRSGQ LGMCNDPYCT TCPSYYNRKA AQIPTSRVSA LFDSTFHNAL YDDAKGWARR 180
  181 FASSVNRYLP GIMNPHAKEV QTWTKFFALS CLLAIFIDPL FFFLIKVQEQ NKCIMIDWPM 240
  241 TKAFVAVRSV TDVIFTMNIL LQFRLAYVAR ESTVVGAGQL VSHPKKIALH YLKGKFFLDL 300
  301 FIVMPLPQIL ILWIIPAHLG ASGANYAKNL LRAAVLFQYI PKLYRLLPFL AGQTPTGFIF 360
  361 ESAWANFVIN LLTFMLAGHV VGSCWYLFGL QRVNQCLRNA CGNFGRECQD LIDCGNGNSS 420
  421 VLVRATWKDN ASANACFQED GFPYGIYLKA VNLTNHSNLF TRYSYSLFWG FQQISTLAGN 480
  481 QVPSYFLGEV FFTMGIIGLG LLLFALLIGN MQNFLQALGK RNLEMTLRRR DVEQWMSHRR 540
  541 LPDGIRRRVR EAERFNWAAT RGVNEELLFE NMPDDLQRDI RRHLFKFLKK VRIFSLMDEP 600
  601 ILDAIRERLK QRTYIGSSTV LHRGGLVEKM VFIVRGEMES IGEDGSVLPL YEGDVCGEEL 660
  661 LTWCLERSSV NPDGTRIRMP SKGLLSSRNV RCVTNVEAFS LSVADLEDVT SLFSRFLRSH 720
  721 RVQGAIRYDS PYWRLRAARQ IQVAWRYRRR RLHRLCTPQS SYSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle