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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COBL9_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.54
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLLPIFFG VLLLFTVTPP SMSQLPPTIM VPAPAPAPIS PSDLCNGIFL SYDFILGRKI  60
   61 PPNDTADQPY RFESVLTVLN NGREELKEWR VFVGFQHNEI LISATDALIV NGTELPALVG 120
  121 NGTIFGGYPV SDLKTAIQTA GDLKQMTAEI ELVGTQFMVA PPAVPLPSNI SLVNEGWLCP 180
  181 VPTLQSKREL TTCCIRDASI IVNTTITTKF LPRQPGDLTI MYDVIRAYDQ NYLTEVTMEN 240
  241 HNPLGRLDHW ELSFDWMRDE FIQKMQGAYP TVVDATKCIF GPQSLIYTGL DFADVLTCER 300
  301 RPIIIDLPPT KKDDSTLGNI PSCCRNGTIL PRIMDPSKSV SVFTMQVAKM PPDFNRSALF 360
  361 PPQNWRIKGT LNPDYSCGPP VRVTPTFYPD PSGMPTNKSS FASWQIVCNI TQAKTEIPKC 420
  421 CVSFSAFFND SIIPCNTCAC GCVSETRRTC SAETPSLLIP PDALLLPFEN RTALTLAWNA 480
  481 LKHKTLPNPM PCGDNCGVSI NWHMASDYRG GWTVRITIFN WGEIDFPNWF LAVQMKKPAL 540
  541 LGFEKAYSFN ASLLSVDGGV NNTIFMEGLP GLDYLVAEAD EKDPKKKNIR IPGKQQSVIQ 600
  601 FSKKLTPGIN VAERDGFPAK VIFNGEECLL PDLLPMASGG RRNGAITVLS FITFYVAAFM 660
  661 VLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle