YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBL1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT  60
   61 VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ GDCSKFKGTI PHCCKKTPSV 120
  121 VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA 180
  181 PGPGYTCSPA KIVKPTRFIG TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK 240
  241 TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH 300
  301 VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG 360
  361 ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW AFPRRIYFNG DNCVMPPPDS 420
  421 YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Type	Start	End	Confidence
Signal Peptide	1	33	0.85
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	431	0.96
Transmembrane Helix	432	450	0.76
Cytoplasmic	451	452	0.64