YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C71BX_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATILFLSLL FLSCILLAAF THKKRQQHQR KPPSPPGFPI IGNLHQLGEL PHQSLWRLSK  60
   61 KYGHVMLLKF GSIPTVVVSS SETAKQVLKI HDLHCCSRPS LAGPRALSYN YLDIAFSPFD 120
  121 DYWKELRRIC VQELFSVKRV QSFQPIKEDE VKKLIDSVSE SASQGTPVNL SEKFTSLTVR 180
  181 VTCKATFGVN FQGTVLNSDR FEKLIHDTYL FLGSFSASDY FPNGGWIIDW LTGLHGQRER 240
  241 SVRALDAFYE QMFDLHKQGN KEGVEDFVDL LLRLEKEETV IGYGKLTRNH IKAILMNVLI 300
  301 GGIGTSAITM TWAMTELMRN PRVMKKVQSE IRNQIGKKSM ITLDDIDQLH YLKMVINETW 360
  361 RLHPPSPFLI PRQVMSEFEL NDYVIPVKTR LYVNVWAIGR DPDTWKDPEE FLPERFVNSS 420
  421 IDAKGQHFEL LPFGSGRRMC PAMYMGTTMV EFGLANMLYH FDWKIPVGMV AEDIDLEESP 480
  481 GLNASKKNEL VLVPLKYLDH

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	292	0.98
Transmembrane Helix	293	315	0.66
Cytoplasmic	316	441	0.67
Transmembrane Helix	442	459	0.35
Non-Cytoplasmic	460	500	0.62