YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BCAT2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN  60
   61 LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG VLNYGQAIYE GTKAYRKENG 120
  121 KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL 180
  181 MGSGPILGLG PAPEYTFIVY ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY 240
  241 APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR 300
  301 KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES 360
  361 VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Type	Start	End	Confidence
Signal Peptide	1	27	0.67
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	388	0.99