YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT14_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.70
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	55	0.90
Transmembrane Helix	56	77	0.91
Cytoplasmic	78	89	0.80
Transmembrane Helix	90	111	0.80
Non-Cytoplasmic	112	136	0.83
Transmembrane Helix	137	155	0.95
Cytoplasmic	156	162	0.82
Transmembrane Helix	163	184	0.92
Non-Cytoplasmic	185	204	0.94
Transmembrane Helix	205	227	0.90
Cytoplasmic	228	243	0.92
Transmembrane Helix	244	264	0.91
Non-Cytoplasmic	265	291	0.93
Transmembrane Helix	292	313	0.92
Cytoplasmic	314	320	0.84
Transmembrane Helix	321	340	0.91
Non-Cytoplasmic	341	347	0.70
Transmembrane Helix	348	368	0.89
Cytoplasmic	369	378	0.91
Transmembrane Helix	379	398	0.89
Non-Cytoplasmic	399	424	0.91
Transmembrane Helix	425	451	0.88
Cytoplasmic	452	504	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASALSCSAS DLIPLLSGGA NATAAAAAAE YICGRFDTVA GKFTDAAYAI DNTYLLFSAY  60
   61 LVFAMQLGFA MLCAGSVRAK NTMNIMLTNV IDAAAGGLFY YLFGFAFAFG SPSNGFIGKH 120
  121 FFGMYDFPQP TFDYPYFLYQ WTFAIAAAGI TSGSIAERTQ FVAYLIYSSF LTGLVYPIVS 180
  181 HWFWSSDGWA SPARSENLLF QSGVIDFAGS GVVHMVGGIA GLWGALIEGP RIGRFGVGGK 240
  241 PVTLRGHSAT LVVLGTFLLW FGWYGFNPGS FATIFKAYGE TPGSSFYGQW SAVGRTAVTT 300
  301 TLAGCTAALT TLFGKRLIDG YWNVTDVCNG LLGGFAAITS GCSVVEPWAA LVCGFVAAWV 360
  361 LMGCNRLAEK LQFDDPLEAA QLHGGCGAWG IIFTGLFAEK RYIAEIFGGD PNRPFGLLMG 420
  421 GGGRLLAAHV VQILVITGWV SVTMGTLFFI LHKLKLLRIP AEDEIAGVDP TSHGGLAYMY 480
  481 TEDEIRNGIM VRRVGGDNDP NVGV