YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT12_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.64
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	56	0.89
Transmembrane Helix	57	78	0.91
Cytoplasmic	79	88	0.84
Transmembrane Helix	89	111	0.80
Non-Cytoplasmic	112	139	0.87
Transmembrane Helix	140	159	0.93
Cytoplasmic	160	166	0.82
Transmembrane Helix	167	188	0.92
Non-Cytoplasmic	189	208	0.95
Transmembrane Helix	209	232	0.87
Cytoplasmic	233	247	0.89
Transmembrane Helix	248	269	0.91
Non-Cytoplasmic	270	294	0.94
Transmembrane Helix	295	316	0.90
Cytoplasmic	317	324	0.78
Transmembrane Helix	325	344	0.92
Non-Cytoplasmic	345	350	0.75
Transmembrane Helix	351	371	0.95
Cytoplasmic	372	381	0.93
Transmembrane Helix	382	401	0.93
Non-Cytoplasmic	402	426	0.93
Transmembrane Helix	427	451	0.90
Cytoplasmic	452	514	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTATTTCSA VDLSALLSSS SNSTSSLAAA TFLCSQISNI SNKLSDTTYA VDNTYLLFSA  60
   61 YLVFAMQLGF AMLCAGSVRA KNTMNIMLTN VLDAAAGAIS YYLFGFAFAF GTPSNGFIGR 120
  121 HHSFFALSSY PERPGSDFSF FLYQWAFAIA AAGITSGSIA ERTQFVAYLI YSTFLTGFVY 180
  181 PTVSHWFWSS DGWASASRSD NNLLFGSGAI DFAGSGVVHM VGGIAGLCGA LVEGPRIGRF 240
  241 DRSGRSVALR GHSASLVVLG TFLLWFGWYG FNPGSFLTIL KGYDKSRPYY GQWSAVGRTA 300
  301 VTTTLSGCTA ALTTLFSKRL LAGHWNVIDV CNGLLGGFAA ITSGCAVVEP WAAIVCGFVA 360
  361 SWVLIGFNLL AKKLKYDDPL EAAQLHGGCG AWGLIFTGLF ARKEYVNEIY SGDRPYGLFM 420
  421 GGGGKLLAAQ IVQIIVIVGW VTVTMGPLFY GLHKMNLLRI SAEDEMAGMD MTRHGGFAYA 480
  481 YNDEDDVSTK PWGHFAGRVE PTSRSSTPTP TLTV