YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALB3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE  60
   61 IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT TDSSAVQKSG GWFGFISDAM 120
  121 ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ 180
  181 QRYAGNQERI QLETSRLYKQ AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF 240
  241 WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK 300
  301 PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP 360
  361 NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK KNKAVAKDTV ELVEESQSES 420
  421 EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV

Type	Start	End	Confidence
Cytoplasmic	1	133	0.62
Transmembrane Helix	134	156	0.59
Non-Cytoplasmic	157	200	0.56
Transmembrane Helix	201	223	0.78
Cytoplasmic	224	233	0.47
Transmembrane Helix	234	253	0.59
Non-Cytoplasmic	254	272	0.76
Transmembrane Helix	273	295	0.85
Cytoplasmic	296	314	0.81
Transmembrane Helix	315	339	0.85
Non-Cytoplasmic	340	462	0.85