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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ALA12_ARATH
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSGRRRK RKIQLSKLFT LTGAKACFKP DHSKIGRSGF SRVVFCNQPD SPEAESRNYC  60
   61 DNYVRTTKYT LATFLPKSLF EQFRRVANFY FLVVGILSFT PLAPYTAVSA IVPLTFVILA 120
  121 TMFKEGVEDW RRKQQDIEVN NRKVRVHRGN GNFDLREWKT LRVGDILKVE KNEFFPADLV 180
  181 LLSSSYEDAV CYVETMNLDG ETNLKLKQGL EVTLSLREEL NFRDFEAFIK CEDPNANLYS 240
  241 FVGTMDLKGE KYPLSPQQLL LRGSKLRNTD YIYGVVIFTG PDTKVVQNST DPPSKRSMIE 300
  301 RKMDKIIYLM FLMVFSLAFF GSVLFGIWTR DDFQNGVMER WYLKPDDSSI FFDPKRAPMA 360
  361 AIYHFLTALM LNSYFIPISL YVSIEIVKVL QSIFINQDIH MYYEEADKPA HARTSNLNEE 420
  421 LGQVGTILSD KTGTLTCNSM EFIKCSIAGT AYGRGVTEVE MAMDKRKGSA LVNQSNGNST 480
  481 EDAVAAEPAV KGFNFRDERI MDGNWVTETH ADVIQKFFQL LAVCHTVIPE VDEDTGKISY 540
  541 EAESPDEAAF VIAARELGFE FFTRTQTTIS VRELDLVTGE RVERLYSVLN VLEFSSSKKR 600
  601 MSVIVQDQDG KLLLLCKGAD SVMFERLSES GRKYEKETRD HVNEYADAGL RTLILAYREL 660
  661 DENEYEVFTE RISEAKNSVS ADREALIDEV TEKIEKNLVL LGATAVEDKL QNGVPDCINK 720
  721 LAQAGIKIWV LTGDKMETAI NIGFACSLLR RDMKQIIINL ETPEIQQLEK SGEKDAIAAL 780
  781 KENVLHQITS GKAQLKASGG NAKAFALIID GKSLAYALEE DMKGIFLELA IGCASVICCR 840
  841 SSPKQKALVT RLVKTGSGQT TLAIGDGAND VGMLQEADIG VGISGVEGMQ AVMSSDIAIA 900
  901 QFRYLERLLL VHGHWCYRRI SKMICYFFYK NITFGFTLFL YEAYTSFSAT PAYNDWYLSL 960
  961 YSVFFTSLPV ICLGIFDQDV SAPFCLKFPV LYQEGVQNLL FSWRRILSWM FHGFCSAIII1020
 1021 FFLCKTSLES QAFNHEGKTA GRDILGGTMY TCVVWVVSLQ MVLTISYFTL IQHVVVWGSV1080
 1081 VIWYLFLMVY GSLPIRMSTD AYMVFLEALA PAPSYWITTL FVVLSTMMPY FIFSAIQMRF1140
 1141 FPMSHGTVQL LRYEDQCSNS GNFEMGRQGS VRPTLVMRSH QPES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle