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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ALA11_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKCRRRRLH LSNIYAFKGR KSNFQEDHSH IGGPGFSRVV YCNEPNSPAA ERRNYVGNYV  60
   61 RSTKYTLASF IPKSLFEQFR RVANFYFLVT GVLSLTALSP YSPISALLPL TFVIAASMVK 120
  121 EAIEDWGRKK QDIEMNNRKV KVHDGNGIFR REGWRDLKVG NIVRVEKDEF FPADLLLLSS 180
  181 SYEDSICYVE TMNLDGETNL KVKQGLEATS SALHEDSDFK ELKAVVKCED PNADLYTFVG 240
  241 TLHFEEQRLP LSITQLLLRD SKLRNTEYIY GVVVFTGHDT KVIQNSTDPP SKRSRIERKM 300
  301 DKIIYLMFGV VFLMSFIGSI VFGIETREDR VRNGGRTERW YLRPDNADIF FDPDRAPMAA 360
  361 VYHFFTAVML YSYFIPISLY VSIEIVKVLQ SLFINNDILM YYEENDKPAH ARTSNLNEEL 420
  421 GMVDTILSDK TGTLTCNSME FIKCSIAGTA YGRGITEVER SMAMRSNGSS LVGDDLDVVV 480
  481 DQSGPKIKGF NFLDERVMKG NWVKQRDAAV LQKFFRLLAV CHTAIPETDE ATGSVSYEAE 540
  541 SPDEAAFVVA AREFGFEFFS RTQNGISFRE LDLASGKTVE RVYRLLNVLE FNSARKRMSV 600
  601 IVRDEDGRLL LLSKGADNVM FERLAKNGRK FEEKTREHVN EYADAGLRTL ILAYREVDEN 660
  661 EYIEFSKNFN EAKNSVTADR ESLIDEITEQ MERDLILLGA TAVEDKLQNG VPDCIDKLAQ 720
  721 AGIKIWVLTG DKMETAINIG FACSLLRQEM KQIIINLETP HIKALEKAGE KDAIEHASRE 780
  781 SVVNQMEEGK ALLTASSSAS SHEAFALIID GKSLTYALED DFKKKFLDLA TGCASVICCR 840
  841 SSPKQKALVT RLVKSGTGKT TLAIGDGAND VGMLQEADIG VGISGVEGMQ AVMSSDIAIA 900
  901 QFRYLERLLL VHGHWCYSRI SSMICYFFYK NITFGVTVFL YEAYTSFSAQ PAYNDWFLSL 960
  961 FNVFFSSLPV IALGVFDQDV SARYCYKFPL LYQEGVQNLL FSWKRIIGWM FNGVFTALAI1020
 1021 FFLCKESLKH QLYNPNGKTA GREILGGTMY TCVVWVVNLQ MALAISYFTW LQHIVIWGSV1080
 1081 AFWYIFLMIY GAITPSFSTD AYKVFIEALA PAPSYWLTTL FVMFFALIPF FVFKSVQMRF1140
 1141 FPGYHQMIQW IRYEGHSNDP EFVEMVRQRS IRPTTVGFTA RRAASVRRSG RFHDQLNKNF1200
 1201 IAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle