YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALA9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.73
Transmembrane Helix	86	103	0.73
Non-Cytoplasmic	104	106	0.48
Transmembrane Helix	107	124	0.77
Cytoplasmic	125	305	0.94
Transmembrane Helix	306	328	0.94
Non-Cytoplasmic	329	359	0.93
Transmembrane Helix	360	382	0.83
Cytoplasmic	383	929	0.89
Transmembrane Helix	930	949	0.70
Non-Cytoplasmic	950	1009	0.47
Transmembrane Helix	1010	1032	0.83
Cytoplasmic	1033	1047	0.46
Transmembrane Helix	1048	1069	0.77
Non-Cytoplasmic	1070	1073	0.38
Transmembrane Helix	1074	1097	0.80
Cytoplasmic	1098	1115	0.51
Transmembrane Helix	1116	1137	0.90
Non-Cytoplasmic	1138	1200	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGTKRRR RRLQLSKLYT LTCAQACFKQ DHSQIGGPGF SRVVYCNEPD SPEADSRNYS  60
   61 DNYVRTTKYT LATFLPKSLF EQFRRVANFY FLVTGVLAFT PLAPYTASSA IVPLLFVIGA 120
  121 TMVKEGVEDW RRQKQDNEVN NRKVKVHRGD GSFDAKEWKT LSIGDIVKVE KNEFFPADLV 180
  181 LLSSSYEDAI CYVETMNLDG ETNLKVKQGL EVTSSLRDEF NFKGFEAFVK CEDPNANLYS 240
  241 FVGTMELKGA KYPLSPQQLL LRDSKLRNTD FIFGAVIFTG HDTKVIQNST DPPSKRSMIE 300
  301 KKMDKIIYLM FFMVITMAFI GSVIFGVTTR DDLKDGVMKR WYLRPDSSSI FFDPKRAPVA 360
  361 AIYHFLTAVM LYSYFIPISL YVSIEIVKVL QSIFINQDIH MYYEEADKPA RARTSNLNEE 420
  421 LGQVDTILSD KTGTLTCNSM EFIKCSVAGT AYGRGVTEVE MAMGRRKGGP LVFQSDENDI 480
  481 DMEYSKEAIT EESTVKGFNF RDERIMNGNW VTETHADVIQ KFFRLLAVCH TVIPEVDEDT 540
  541 EKISYEAESP DEAAFVIAAR ELGFEFFNRT QTTISVRELD LVSGKRVERL YKVLNVLEFN 600
  601 STRKRMSVIV QEEDGKLLLL CKGADNVMFE RLSKNGREFE EETRDHVNEY ADAGLRTLIL 660
  661 AYRELDEKEY KVFNERISEA KSSVSADRES LIEEVTEKIE KDLILLGATA VEDKLQNGVP 720
  721 DCIDKLAQAG IKIWVLTGDK METAINIGFA CSLLRQDMKQ IIINLETPEI QSLEKTGEKD 780
  781 VIAKASKENV LSQIINGKTQ LKYSGGNAFA LIIDGKSLAY ALDDDIKHIF LELAVSCASV 840
  841 ICCRSSPKQK ALVTRLVKSG NGKTTLAIGD GANDVGMLQE ADIGVGISGV EGMQAVMSSD 900
  901 IAIAQFRYLE RLLLVHGHWC YRRISTMICY FFYKNITFGF TLFLYETYTT FSSTPAYNDW 960
  961 FLSLYNVFFS SLPVIALGVF DQDVSARYCL KFPLLYQEGV QNVLFSWRRI LGWMFNGFYS1020
 1021 AVIIFFLCKS SLQSQAFNHD GKTPGREILG GTMYTCIVWV VNLQMALAIS YFTLIQHIVI1080
 1081 WSSIVVWYFF ITVYGELPSR ISTGAYKVFV EALAPSLSYW LITLFVVVAT LMPYFIYSAL1140
 1141 QMSFFPMYHG MIQWLRYEGQ CNDPEYCDIV RQRSIRPTTV GFTARLEAKK RSVRISEPAS1200
 1201