YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALA8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.89
Transmembrane Helix	82	99	0.83
Non-Cytoplasmic	100	104	0.58
Transmembrane Helix	105	123	0.78
Cytoplasmic	124	298	0.92
Transmembrane Helix	299	321	0.94
Non-Cytoplasmic	322	353	0.88
Transmembrane Helix	354	376	0.84
Cytoplasmic	377	920	0.90
Transmembrane Helix	921	940	0.81
Non-Cytoplasmic	941	955	0.78
Transmembrane Helix	956	975	0.78
Cytoplasmic	976	1004	0.81
Transmembrane Helix	1005	1028	0.86
Non-Cytoplasmic	1029	1040	0.73
Transmembrane Helix	1041	1058	0.76
Cytoplasmic	1059	1072	0.55
Transmembrane Helix	1073	1092	0.87
Non-Cytoplasmic	1093	1111	0.83
Transmembrane Helix	1112	1132	0.95
Cytoplasmic	1133	1189	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGERRKGMK FSKLYSFKCF KPFSREDHSQ IGSRGYSRVV FCNDPDNPEA LQLNYRGNYV  60
   61 STTKYTAANF IPKSLFEQFR RVANIYFLVV AFVSFSPLAP YTAPSVLAPL LIVIGATMVK 120
  121 EGVEDLRRRK QDVEANNRKV EVLGKTGTFV ETKWKNLRVG DLVKVHKDEY FPADLLLLSS 180
  181 SYEDGICYVE TMNLDGETNL KLKHALEITS DEESIKNFRG MIKCEDPNEH LYSFVGTLYF 240
  241 EGKQYPLSPQ QILLRDSKLK NTDYVYGVVV FTGHDTKVMQ NATDPPSKRS KIEKKMDQII 300
  301 YILFSILIVI AFTGSVFFGI ATRRDMSDNG KLRRWYLRPD HTTVFYDPRR AVAAAFFHFL 360
  361 TALMLYGYLI PISLYVSIEV VKVLQSIFIN QDQEMYHEET DRPARARTSN LNEELGQVDT 420
  421 ILSDKTGTLT CNSMEFVKCS IAGTAYGRGM TEVEVALRKQ KGLMTQEEVG DNESLSIKEQ 480
  481 KAVKGFNFWD ERIVDGQWIN QPNAELIQKF FRVLAICHTA IPDVNSDTGE ITYEAESPDE 540
  541 AAFVIASREL GFEFFSRSQT SISLHEIDHM TGEKVDRVYE LLHVLEFSSS RKRMSVIVRN 600
  601 PENRLLLLSK GADSVMFKRL AKHGRQNERE TKEHIKKYAE AGLRTLVITY REIDEDEYIV 660
  661 WEEEFLNAKT LVTEDRDALI DAAADKIEKD LILLGSTAVE DKLQKGVPDC IEKLSQAGVK 720
  721 IWVLTGDKTE TAINIGYACS LLREGMKQIL VTLDSSDIEA LEKQGDKEAV AKASFQSIKK 780
  781 QLREGMSQTA AVTDNSAKEN SEMFGLVIDG KSLTYALDSK LEKEFLELAI RCNSVICCRS 840
  841 SPKQKALVTR LVKNGTGRTT LAIGDGANDV GMLQEADIGV GISGAEGMQA VMASDFAIAQ 900
  901 FRFLERLLLV HGHWCYRRIT LMICYFFYKN LAFGFTLFWY EAYASFSGKP AYNDWYMSCY 960
  961 NVFFTSLPVI ALGVFDQDVS ARLCLKYPLL YQEGVQNVLF SWERILGWML NGVISSMIIF1020
 1021 FLTINTMATQ AFRKDGQVVD YSVLGVTMYS SVVWTVNCQM AISINYFTWI QHCFIWGSIG1080
 1081 VWYLFLVIYG SLPPTFSTTA FQVFVETSAP SPIYWLVLFL VVFSALLPYF TYRAFQIKFR1140
 1141 PMYHDIIVEQ RRTERTETAP NAVLGELPVQ VEFTLHHLRA NLSRRDSWN