YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALA5_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.57
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	106	0.61
Transmembrane Helix	107	123	0.57
Cytoplasmic	124	303	0.85
Transmembrane Helix	304	326	0.96
Non-Cytoplasmic	327	354	0.92
Transmembrane Helix	355	377	0.85
Cytoplasmic	378	939	0.98
Transmembrane Helix	940	959	0.88
Non-Cytoplasmic	960	968	0.81
Transmembrane Helix	969	989	0.85
Cytoplasmic	990	1018	0.87
Transmembrane Helix	1019	1042	0.87
Non-Cytoplasmic	1043	1056	0.74
Transmembrane Helix	1057	1077	0.86
Cytoplasmic	1078	1085	0.66
Transmembrane Helix	1086	1106	0.90
Non-Cytoplasmic	1107	1124	0.82
Transmembrane Helix	1125	1147	0.89
Cytoplasmic	1148	1228	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGRIRSKL RLSLLYTFGC LRPATLEGQD SQPIQGPGFS RTVFCNQPHM HKKKPLRYRS  60
   61 NYVSTTRYNL ITFFPKSLYE QFHRAANLYF LVAAILSVFP LSPFNKWSMI APLVFVVGLS 120
  121 MLKEALEDWR RFMQDVKINA RKTCVHKSDG VFRQRKWKKV SVGDIVKVEK DEFFPADLLL 180
  181 LSSSYEDGIC YVETMNLDGE TNLKVKRSLE VSLPLDDDES FKNFMATIRC EDPNPNLYTF 240
  241 VGNLEFERQT FPLDPSQILL RDSKLRNTTY VYGVVVFTGF DTKVMQNSTK SPSKRSRIER 300
  301 TMDYIIYTLL VLLILISCIS SSGFAWETEF HMPKMWYLRP GEPIDFTNPI NPIYAGVVHL 360
  361 ITALLLYGYL IPISLYVSIE VVKVWQASFI NQDLHMYDDE SGVPANARTS NLNEELGQVH 420
  421 TILSDKTGTL TCNQMDFLKC SIAGTSYGVR SSEVEVAAAK QMAVDLEEHG EISSTPQSQT 480
  481 KVYGTWDSSR TQEIEVEGDN NYNTPRAPIK GFGFEDNRLM NGNWLRESQP NDILQFFRIL 540
  541 AICHTAIPEL NEETGKYTYE AESPDEASFL AAAREFGFEF FKRTQSSVFI RERFSGSGQI 600
  601 IEREYKVLNL LEFTSKRKRM TVIVRDEEGQ ILLLCKGADS IIFERLAKNG KTYLGPTTRH 660
  661 LTEYGEAGLR TLALAYRKLD EDEYAAWNSE FLKAKTSIGS DRDELLETGA DMIEKELILI 720
  721 GATAVEDKLQ KGVPQCIDKL AQAGLKLWVL TGDKMETAIN IGFACSLLRQ GMRQICITSM 780
  781 NSEGGSQDSK RVVKENILNQ LTKAVQMVKL EKDPHAAFAL IIDGKTLTYA LEDDMKYQFL 840
  841 ALAVDCASVI CCRVSPKQKA LVVRLVKEGT GKTTLAIGDG ANDVGMIQEA DIGVGISGVE 900
  901 GMQAVMASDF SIAQFRFLER LLVVHGHWCY KRIAQMICYF FYKNIAFGLT LFYFEAFTGF 960
  961 SGQSVYNDYY LLLFNVVLTS LPVIALGVFE QDVSSEICLQ FPALYQQGTK NLFFDWSRIL1020
 1021 GWMCNGVYAS LVIFFLNIGI IYSQAFRDNG QTADMDAVGT TMFTCIIWAA NVQIALTMSH1080
 1081 FTWIQHVLIW GSIGMWYLFV AIYSMMPPSY SGNIYRILDE ILAPAPIYWM ATLLVTVAAV1140
 1141 LPYVAHIAFQ RFLNPLDHHI IQEIKYYGRD IEDARLWTRE RTKAREKTKI GFTARVDAKI1200
 1201 RHLRSKLNKK QSNLSHFSAQ DAMSPRSL