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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AHM4_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGEESKKM NLQTSYFDVV GICCSSEVSI VGNVLRQVDG VKEFSVIVPS RTVIVVHDTF  60
   61 LISPLQIVKA LNQARLEASV RPYGETSLKS QWPSPFAIVS GVLLVLSFFK YFYSPLEWLA 120
  121 IVAVVAGVFP ILAKAVASVT RFRLDINALT LIAVIATLCM QDFTEAATIV FLFSVADWLE 180
  181 SSAAHKASIV MSSLMSLAPR KAVIADTGLE VDVDEVGINT VVSVKAGESI PIDGVVVDGS 240
  241 CDVDEKTLTG ESFPVSKQRE STVMAATINL NGYIKVKTTA LARDCVVAKM TKLVEEAQKS 300
  301 QTKTQRFIDK CSRYYTPAVV VSAACFAVIP VLLKVQDLSH WFHLALVVLV SGCPCGLILS 360
  361 TPVATFCALT KAATSGFLIK TGDCLETLAK IKIVAFDKTG TITKAEFMVS DFRSLSPSIN 420
  421 LHKLLYWVSS IECKSSHPMA AALIDYARSV SVEPKPDIVE NFQNFPGEGV YGRIDGQDIY 480
  481 IGNKRIAQRA GCLTDNVPDI EATMKRGKTI GYIYMGAKLT GSFNLLDGCR YGVAQALKEL 540
  541 KSLGIQTAML TGDNQDAAMS TQEQLENALD IVHSELLPQD KARIIDDFKI QGPTMMVGDG 600
  601 LNDAPALAKA DIGISMGISG SALATETGDI ILMSNDIRKI PKGMRLAKRS HKKVIENVVL 660
  661 SVSIKGAIMV LGFVGYPLVW AAVLADAGTC LLVILNSMML LRDEREAVST CYRASTSSPV 720
  721 KLEEDEVEDL EVGLLQKSEE TSKKSCCSGC CSGPKDNQQK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle