YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	40	0.80
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	70	0.87
Transmembrane Helix	71	93	0.85
Cytoplasmic	94	101	0.85
Transmembrane Helix	102	123	0.94
Non-Cytoplasmic	124	131	0.78
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	473	0.99
Transmembrane Helix	474	492	0.89
Non-Cytoplasmic	493	503	0.75
Transmembrane Helix	504	525	0.87
Cytoplasmic	526	539	0.73
Transmembrane Helix	540	561	0.87
Non-Cytoplasmic	562	567	0.71
Transmembrane Helix	568	585	0.55
Cytoplasmic	586	592	0.46
Transmembrane Helix	593	617	0.89
Non-Cytoplasmic	618	619	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW SITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAQIGDDG KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN 240
  241 TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF 300
  301 GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS 360
  361 DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK AGPMNGDYGG EEESERVKEV 420
  421 PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL 480
  481 IGLIWALVAF RWDVAMPKII QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA 540
  541 MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI 600
  601 FGMLIALPIT LVYYILLGL