YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.90
Cytoplasmic	29	40	0.81
Transmembrane Helix	41	60	0.92
Non-Cytoplasmic	61	70	0.89
Transmembrane Helix	71	93	0.90
Cytoplasmic	94	99	0.88
Transmembrane Helix	100	123	0.89
Non-Cytoplasmic	124	131	0.83
Transmembrane Helix	132	152	0.95
Cytoplasmic	153	426	0.99
Transmembrane Helix	427	445	0.91
Non-Cytoplasmic	446	456	0.77
Transmembrane Helix	457	476	0.92
Cytoplasmic	477	491	0.84
Transmembrane Helix	492	512	0.92
Non-Cytoplasmic	513	518	0.73
Transmembrane Helix	519	536	0.72
Cytoplasmic	537	544	0.63
Transmembrane Helix	545	568	0.90
Non-Cytoplasmic	569	570	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS  60
   61 QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW LITLFSIATL PNTLVMGIPL 120
  121 LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD 180
  181 DVISLDGMDP LRTETETDVN GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV 240
  241 NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS 300
  301 LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK 360
  361 EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK QEMPSAIVMM RLILTVVGRK 420
  421 LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM 480
  481 IPCGAKKATM GMLIRFISGP LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN 540
  541 LHPDLLSTLV IFGMIVSLPV TILYYVLLGL