YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIN2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.86
Transmembrane Helix	10	33	0.86
Cytoplasmic	34	40	0.86
Transmembrane Helix	41	60	0.90
Non-Cytoplasmic	61	70	0.81
Transmembrane Helix	71	92	0.88
Cytoplasmic	93	99	0.90
Transmembrane Helix	100	123	0.88
Non-Cytoplasmic	124	131	0.83
Transmembrane Helix	132	152	0.92
Cytoplasmic	153	501	0.99
Transmembrane Helix	502	522	0.81
Non-Cytoplasmic	523	531	0.77
Transmembrane Helix	532	553	0.88
Cytoplasmic	554	567	0.73
Transmembrane Helix	568	587	0.90
Non-Cytoplasmic	588	592	0.68
Transmembrane Helix	593	613	0.69
Cytoplasmic	614	621	0.63
Transmembrane Helix	622	645	0.91
Non-Cytoplasmic	646	647	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS  60
   61 SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW MITLFSLSTL PNTLVMGIPL 120
  121 LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD 180
  181 VISLNGREPL QTDAEIGDDG KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT 240
  241 GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ 300
  301 SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV 360
  361 KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA KNAMTRGSST DVSTDPKVSI 420
  421 PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM 480
  481 PPASVMTRLI LIMVWRKLIR NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL 540
  541 GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ 600
  601 AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL