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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ACA12_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDLKEYDYS ALLLNLTTSS LNKAQRRWRF AYAAIYSMRA MLSLVKEIVP ARIDPKTSDA  60
   61 SLSLSYTALE SGEGAKINSM PLSYVPAIDQ EQLVEIMKGK DLPGIQALGG VEGVAASLRT 120
  121 NPTKGIHGNE QEVSRRRDLF GSNTYHKPPP KGLLFFVYEA FKDLTILILL VCAIFSLGFG 180
  181 IKEHGIKEGW YEGGSIFVAV FLVIVVSALS NFRQERQFDK LSKISNNIKV EVLRDSRRQH 240
  241 ISIFDVVVGD VVFLKIGDQI PADGLFLEGH SLQVDESSMT GESDHLEVDH KDNPFLFSGT 300
  301 KIVDGFAQML VVSVGMSTTW GQTMSSINQD SSERTPLQVR LDTLTSTIGK IGLTVAALVL 360
  361 VVLLVRYFTG NTEKEGKREY NGSKTPVDTV VNSVVRIVAA AVTIVVVAIP EGLPLAVTLT 420
  421 LAYSMKRMMS DQAMVRKLSA CETMGSATVI CTDKTGTLTL NEMKVTKFWL GQESIHEDST 480
  481 KMISPDVLDL LYQGTGLNTT GSVCVSDSGS TPEFSGSPTE KALLSWTVLN LGMDMESVKQ 540
  541 KHEVLRVETF SSAKKRSGVL VRRKSDNTVH VHWKGAAEMV LAMCSHYYTS TGSVDLMDST 600
  601 AKSRIQAIIQ GMAASSLRCI AFAHKIASND SVLEEDGLTL MGIVGLKDPC RPGVSKAVET 660
  661 CKLAGVTIKM ITGDNVFTAK AIAFECGILD HNDKDEEDAV VEGVQFRNYT DEERMQKVDK 720
  721 IRVMARSSPS DKLLMVKCLR LKGHVVAVTG DGTNDAPALK EADIGLSMGI QGTEVAKESS 780
  781 DIVILDDNFA SVATVLKWGR CVYNNIQKFI QFQLTVNVAA LVINFIAAIS AGEVPLTAVQ 840
  841 LLWVNLIMDT LGALALATER PTNELLKRKP VGRTEALITN VMWRNLLVQS LYQIAVLLIL 900
  901 QFKGMSIFSV RKEVKDTLIF NTFVLCQVFN EFNAREMEKK NVFKGLHRNR LFIGIIAITI 960
  961 VLQVIMVEFL KKFADTVRLN GWQWGTCIAL ASLSWPIGFF TKFIPVSETP FLSYFKNPRS1020
 1021 LFKGSRSPSL KKP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle