YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YXIO_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.96
Transmembrane Helix	13	35	0.87
Non-Cytoplasmic	36	51	0.88
Transmembrane Helix	52	74	0.92
Cytoplasmic	75	83	0.89
Transmembrane Helix	84	102	0.98
Non-Cytoplasmic	103	109	0.76
Transmembrane Helix	110	132	0.90
Cytoplasmic	133	148	0.91
Transmembrane Helix	149	170	0.94
Non-Cytoplasmic	171	179	0.76
Transmembrane Helix	180	202	0.84
Cytoplasmic	203	236	0.94
Transmembrane Helix	237	258	0.90
Non-Cytoplasmic	259	267	0.82
Transmembrane Helix	268	291	0.87
Cytoplasmic	292	301	0.82
Transmembrane Helix	302	321	0.95
Non-Cytoplasmic	322	326	0.92
Transmembrane Helix	327	349	0.83
Cytoplasmic	350	361	0.86
Transmembrane Helix	362	384	0.87
Non-Cytoplasmic	385	391	0.71
Transmembrane Helix	392	411	0.96
Cytoplasmic	412	428	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRFTKQEN SWVLYDWANS AYSIVVTTAV FPLFYKSAAA ESGVSAAQST AYLGYTIAIS  60
   61 TFILAMLGPI LGTIADYEGC KKKFFGFFVS AGVASTAMLA FIPSEHWLLL LLFYTVSAIG 120
  121 FSGANVFYDA FLVDVTPEKR MNLVSARGFG LGYIGSTIPF IISIAVILLA QAETIPVSVS 180
  181 AASQLSFFIT AAWWGLFTIP MIKHVHQRYY IKKEPHIVIN SFKRLGQTMK RIRQYRALFL 240
  241 FLLAYFFYID GVGTIITMST SYGSDLGIGS SSLLIILFVT QVVAAPFSII YGKLAERFTG 300
  301 KTMLYVGIVI YMIVCVYAYF METTLDFWIL AMLVATSQGG IQALSRSYFA KLVPKRHANE 360
  361 FFGFYNIFGK FASIMGPLLI AVTAQLTGKS STAVFSLIIL FVIGIVILAF VPEETSTDVS 420
  421 QQQNDLPL