YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7446721, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	31	0.86
Non-Cytoplasmic	32	41	0.84
Transmembrane Helix	42	64	0.88
Cytoplasmic	65	74	0.84
Transmembrane Helix	75	93	0.96
Non-Cytoplasmic	94	99	0.77
Transmembrane Helix	100	121	0.93
Cytoplasmic	122	133	0.85
Transmembrane Helix	134	156	0.87
Non-Cytoplasmic	157	162	0.78
Transmembrane Helix	163	182	0.94
Cytoplasmic	183	239	0.95
Transmembrane Helix	240	261	0.85
Non-Cytoplasmic	262	275	0.84
Transmembrane Helix	276	296	0.93
Cytoplasmic	297	306	0.85
Transmembrane Helix	307	329	0.92
Non-Cytoplasmic	330	336	0.81
Transmembrane Helix	337	360	0.90
Cytoplasmic	361	371	0.78
Transmembrane Helix	372	393	0.89
Non-Cytoplasmic	394	399	0.76
Transmembrane Helix	400	422	0.90
Cytoplasmic	423	457	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQSNIWLY FFGALGGALY GYDTGVISGA ILFMKKELGL NAFTEGLVVS SLLVGAILGS  60
   61 GAAGKLTDRF GRKKAIMAAA LLFCIGGLGV ALAPNTGVMV LFRIILGLAV GTSTTIVPLY 120
  121 LSELAPKHKR GALSSLNQLM ITVGILLSYI VNYIFADAEA WRWMLGLAAV PSLLLLIGIL 180
  181 FMPESPRWLF TNGEESKAKK ILEKLRGTKD IDQEIHDIKE AEKQDEGGLK ELFDPWVRPA 240
  241 LIAGLGLAFL QQFIGTNTII YYAPKTFTNV GFGNSASILG TVGIGTVNVL MTLVAIKIID 300
  301 KIGRKPLLLF GNAGMVISLI VLALVNLFFN NTPAASWTTV ICLGVFIVVF AVSWGPVVWV 360
  361 MLPELFPLHV RGIGTGVSTL MLHVGTLIVS LTYPILMEAI GISYLFLIYA AIGIMAFLFV 420
  421 RFKVTETKGR SLEEIEQDLR DKNGQGGAAG KQQTVGT