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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COPA_BACSU
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSEQKEIAM QVSGMTCAAC AARIEKGLKR MPGVTDANVN LATETSNVIY DPAETGTAAI  60
   61 QEKIEKLGYH VVTEKAEFDI EGMTCAACAN RIEKRLNKIE GVANAPVNFA LETVTVEYNP 120
  121 KEASVSDLKE AVDKLGYKLK LKGEQDSEAA AKKKEERKQT ARLIFSAVLS FPLLWAMVSH 180
  181 FTFTSFIWVP DIFLNPWMQF ALATPVQFLI GWPFYVGAYK ALRNKSANMD VLVALGTTAA 240
  241 YAYSLYLTFQ SIGSHGHTDG LYYETSAILL TLILLGKLFE TKAKGRSSDA IKKLMKLQAK 300
  301 TATVVRDGQE QIIPIDEVLV NDIVYVKPGE RIPVDGEVVE GRSAVDESMI TGESLPVDKN 360
  361 PGDSVTGSTV NANGFLKIKA VNVGKDTALS HIIKIVEEAQ GSKAPIQRLA DQISGIFVPI 420
  421 VLGIAVLTFL IWYLWAAPGD FAEAISKFIA VLVIACPCAL GLATPTSIMA GSGRAAEFGI 480
  481 LFKGGEHLEK THRLDTIVLD KTGTVTNGKP RLTDAIPFGR FEEKDLLQFA AAAETGSEHP 540
  541 LGEAIIAGVK DKGLEIPKLT RFEAKVGAGI LAEAGGKSIL VGTRKLMESE QVEHGALLAQ 600
  601 MEELEAEGKT VMLVSIDGEA AGLVAVADTI KDTSRKAVAR LKELGLDVIM MTGDNRRTAE 660
  661 AIAKEAGIAN IIAEVLPEQK AAEIARLQKE GRQTAMVGDG INDAPALATA DIGMAIGTGT 720
  721 DIAMETADIT LIRGDLNSIA DAIRMSRLTM KNIKQNLFWA LGYNSLGIPI AALGFLAPWI 780
  781 AGAAMAFSSV SVVLNALRLQ KVK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle