YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YUSP_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.97
Transmembrane Helix	13	33	0.93
Non-Cytoplasmic	34	48	0.73
Transmembrane Helix	49	69	0.88
Cytoplasmic	70	78	0.81
Transmembrane Helix	79	98	0.95
Non-Cytoplasmic	99	108	0.70
Transmembrane Helix	109	130	0.90
Cytoplasmic	131	139	0.81
Transmembrane Helix	140	161	0.91
Non-Cytoplasmic	162	167	0.90
Transmembrane Helix	168	188	0.93
Cytoplasmic	189	198	0.83
Transmembrane Helix	199	220	0.93
Non-Cytoplasmic	221	228	0.84
Transmembrane Helix	229	249	0.94
Cytoplasmic	250	267	0.95
Transmembrane Helix	268	291	0.90
Non-Cytoplasmic	292	305	0.83
Transmembrane Helix	306	327	0.90
Cytoplasmic	328	334	0.81
Transmembrane Helix	335	352	0.97
Non-Cytoplasmic	353	359	0.78
Transmembrane Helix	360	383	0.90
Cytoplasmic	384	400	0.89
Transmembrane Helix	401	420	0.89
Non-Cytoplasmic	421	492	0.95
Transmembrane Helix	493	513	0.94
Cytoplasmic	514	541	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSKEGKQS KRTLLITGLI IAMFFSALDG TIVGTAMPKI VGDLGGLSMM TWLTTAYLLT  60
   61 STTIVPIAGK LADLLGRRIV YVSGLIIFMA ASALCGMANN MTELIIFRGL QGIGGGIMMP 120
  121 MAMIVIGDLF TGKQRAKFQG VFGAIYGLAS VIGPQIGGWI VDSLNWKWVF YINLPVGIIA 180
  181 VIFIARGLQG RQQTGPINFD IAGIFTMIVG VVSLLLALSF GGKDYAWDSW QILGLFALAL 240
  241 IGIVSFIIVE SKAKEPILPM YLFKNRTFTF LNLIGFFMSI GMFGAITFVP FFMQGIVGVS 300
  301 ASESGTIMTP MMISMIITSI IGGQLVYKIG IKPQIITGML VMAGGFLLLT TLDLDTSKLV 360
  361 ATSFMAIIGL GMGLVMPILT LALQESFSKE ELGVVTSSSQ FFRSIGGTFG ITMLGAVMNA 420
  421 RSGNLLTDKL VPYLDSLPAQ ASSFAAQLKG MIDTNPQGLL QSLFSPDAVK QIPAAFSSHI 480
  481 VPILKTSLMD SLHSVFYTGL IFIAVGAVFT LFLKPIKLSN KKAEDQQEKE KAAKAVESPS 540
  541 H