YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221320237
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.96
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	44	0.70
Transmembrane Helix	45	64	0.92
Cytoplasmic	65	95	0.88
Transmembrane Helix	96	117	0.87
Non-Cytoplasmic	118	124	0.84
Transmembrane Helix	125	143	0.97
Cytoplasmic	144	153	0.78
Transmembrane Helix	154	177	0.87
Non-Cytoplasmic	178	200	0.79
Transmembrane Helix	201	221	0.90
Cytoplasmic	222	239	0.89
Transmembrane Helix	240	261	0.93
Non-Cytoplasmic	262	281	0.89
Transmembrane Helix	282	304	0.86
Cytoplasmic	305	330	0.89
Transmembrane Helix	331	353	0.87
Non-Cytoplasmic	354	359	0.73
Transmembrane Helix	360	381	0.91
Cytoplasmic	382	400	0.92
Transmembrane Helix	401	422	0.93
Non-Cytoplasmic	423	427	0.87
Transmembrane Helix	428	448	0.92
Cytoplasmic	449	463	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKQKQELHR GLEERHISLM SLGAAIGVGL FLGSASAIQL AGPGILVAYA ASGLVMFFIM  60
   61 RALGEMAIQK PVAGSFSRYA RDYLGPLAGY LTGWNYWFLW VVTCMAEITA VGIYMGFWFP 120
  121 DVPNWIWALS ALVIMTGVNF LAVKAYGELE FWFALIKIVA ILSMIAVGLL MIIAGVGNGG 180
  181 IATGISNLWN NGGFFPHGLK GVLLSLQMVM FAYLGIEMIG VTAGEVKNPQ KSLAKAIDTV 240
  241 FWRILIFYVG ALFVIMSIYP WQEIGSQGSP FVLTFQKVGI PSAAGIINFV VLTAALSSCN 300
  301 SGIFSTGRML FNLAEQKEAP QAYGQLTKGG IPGKAVLASA GALLVGVLLN YVVPAKVFTW 360
  361 VTSIATFGAI WTWAIILLSQ IKYRKSLKPE EKKQLKYKMP LFPFTSYVSL AFLAFVVILM 420
  421 AYSPDTRVAV IIGPIWFLIL LAVYYGKGFH KKNAAAASER NIS