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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|81342088
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNLKIILT PQADTSSKTV EQLNQQIKSL EKKLNSLKLN TNIDSTTLKA LQEFSSAIDT  60
   61 YQKNLKSYNQ TVKETSTVIK NADGSVEKLT QQYKKNGEIL QRETKIINNR NTALKQETQE 120
  121 VNKLTQATEK LGQVQKKTVQ RNLQGQPTKV VQKNRHGFDD IVYTTDPKTN STSSKTTTNY 180
  181 DQQRRAIEQL KQDLEKLRQQ GIVTDTTISS LGRKINTAQS AQQIEALQNR IRMLDDKSAA 240
  241 VAKNNELKKT IELYQRQAQV NVQNLNTRYG SSMGSSNRQA VQDYLNAVNS LNVSTGSNNI 300
  301 RSQIQSLNMQ FRELASNAQT AANQASSFGA ELTQTFKSMS TYLISGSLFY GAISGLKEMV 360
  361 SQAIEIDTLM TNIRRVMNEP DYKYNELLQE SIDLGDTLSN KITDILQMTG DFGRMGFDES 420
  421 ELSTLTKTAQ VLQNVSDLTP DDTVNTLTAA MLNFNIAAND SISIADKLNE VDNNYAVTTL 480
  481 DLANSIRKAG STASTFGVEL NDLIGYTTAI ASTTRESGNI VGNSLKTIFA RIGNNQSSIK 540
  541 ALEQIGISVK TAGGEAKSAS DLISEVAGKW DTLSDAQKQN TSIGVAGIYQ LSRFNAMMNN 600
  601 FSIAQNAAKT AANSTGSAWS EQQKYADSLQ ARVNKLQNNF TEFAIAASDA FISDGLIEFT 660
  661 QAAGSLLNAS TGVIKSVGFL PPLLAAVSTA TLLLSKNTRT LASSLILGTR AMGQETLATA 720
  721 GLEAGMTRAA VASRVLKTAL RGLLVSTLVG GAFAALGWAL ESLISSFAEA KKAKDDFEQS 780
  781 QQTNVEAITT NKDSTDKLIQ QYKELQKVKE SRSLTSDEEQ EYLQVTQQLA QTFPALVKGY 840
  841 DSQGNAILKT NKELEKAIEN TKEYLALKKQ ETRDSAKKTF EDASKEIKKS KDELKQYKQI 900
  901 ADYNDKGRPK WDLIADDDDY KVAADKAKQS MLKAQSDIES GNAKVKDSVL SIANAYSSID 960
  961 ISNTLKTSIS DVVNKLNLKD DLDPEELEKF SSSLGKLQEK MQKALDSGDE KAFDNAKKDL1020
 1021 QSLLETYSKS DSSIDVFKMS FDKAQKNIKD GDKSLSSVKS EVGDLGETLA EAGNEAEDFG1080
 1081 KKLKEALDAN SVDDIKAAIK EMSDAMQFDS VQDVLNGDIF NNTKDQVAPL NDLLEKMAEG1140
 1141 KSISANEANT LIQKDKELAQ AISIENGVVK INRDEVIKQR KVKLDAYNDM VTYSNKLMKT1200
 1201 EVNNAIKTLN ADTLRIDSLK KLRKERKLDM SEAELSDLEV KSINNVADAK KELKKLEEKM1260
 1261 LQPGGYSNSQ IEAMQSVKSA LESYISASEE ATSTQEMNKQ ALVEAGTSLE NWTDQQEKAN1320
 1321 EETKTSMYVV DKYKEALEKV NAEIDKYNKQ VNDYPKYSQK YRDAIKKEIK ALQQKKKLMQ1380
 1381 EQAKLLKDQI KSGNITQYGI VTSTTSSGGT PSSTGGSYSG KYSSYINSAA SKYNVDPALI1440
 1441 AAVIQQESGF NAKARSGVGA MGLMQLMPAT AKSLGVNNAY DPYQNVMGGT KYLAQQLEKF1500
 1501 GGNVEKALAA YNAGPGNVIK YGGIPPFKET QNYVKKIMAN YSKSLSSATS SIASYYTNNS1560
 1561 AFRVSSKYGQ QESGLRSSPH KGTDFAAKAG TAIKSLQSGK VQIAGYSKTA GNWVVIKQDD1620
 1621 GTVAKYMHML NTPSVKAGQS VKAGQTIGKV GSTGNSTGNH LHLQIEQNGK TIDPEKYMQG1680
 1681 IGTSISDASQ AEAERQQGIA QAKSDLLSLQ GDISSVNDQI QELQYELVQS KLDEFDKRIG1740
 1741 DFDVRIAKDE SMANRYTSDS KEFRKYTSDQ KKAVAEQAKI QQQKVNWIQK EIKTNKALNS1800
 1801 AQRAQLQEEL KQAKLDLISV QDQVRELQKQ LVQSKVDETL KSIEKSSSKT QGKIKDVDNK1860
 1861 ISMTEEDEDK VKYYSKQIKL IQQQQKEAKK YIKQLEEQKK AAKGFPDIQE QITEEMQNWK1920
 1921 DKQKDFNLEL YNTKKSIKDI YKSLADEVVS IYKEMYEKMR DIELEAHQKA TQDLIDEIDK1980
 1981 TDDEAKFQKE LKERQDSIQK LTDQINQYSL DDSEFGKSKV KELTEQLQKE QLDLDDFLKD2040
 2041 RESNKRKEAL QDQLEKDEES INNKYDNLVN DERAFKKLED KIMNGKITDI AKQLNEFSKF2100
 2101 INTNMESIGK SISNNLIDKL KEASNALNTA VKGNTTGKKV SSFASGGYTG TGLGAGKLAF2160
 2161 LHDKELILNK TDTANILDTV KAVRETAVDD SPKWGQGVKL ADLIKKGITS IPSLVPNVNQ2220
 2221 SMLTNSLIPN LKKIEIPSKT IASSGDKTIN LTNTFHIDKL IGGESGARSM FESIKNEVVK2280
 2281 LNGSM

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