YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPUD_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.95
Transmembrane Helix	7	26	0.95
Non-Cytoplasmic	27	44	0.96
Transmembrane Helix	45	66	0.92
Cytoplasmic	67	83	0.87
Transmembrane Helix	84	106	0.93
Non-Cytoplasmic	107	138	0.94
Transmembrane Helix	139	158	0.93
Cytoplasmic	159	185	0.92
Transmembrane Helix	186	207	0.88
Non-Cytoplasmic	208	221	0.82
Transmembrane Helix	222	245	0.88
Cytoplasmic	246	255	0.84
Transmembrane Helix	256	276	0.93
Non-Cytoplasmic	277	315	0.93
Transmembrane Helix	316	334	0.94
Cytoplasmic	335	342	0.87
Transmembrane Helix	343	365	0.90
Non-Cytoplasmic	366	394	0.95
Transmembrane Helix	395	420	0.82
Cytoplasmic	421	438	0.84
Transmembrane Helix	439	458	0.93
Non-Cytoplasmic	459	464	0.75
Transmembrane Helix	465	487	0.91
Cytoplasmic	488	512	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHISSVFW IVIAITAAAV LWGVISPDSL QNVSQSAQAF ITDSFGWYYL LVVSLFVGFC  60
   61 LFLIFSPIGK IKLGKPDEKP EFGLLSWFAM LFSAGMGIGL VFYGAAEPIS HYAISSPSGE 120
  121 TETPQAFRDA LRYTFFHWGL HAWAIYAIVA LCIAYFQFRK GAPGLISSTL SPILGDKVNG 180
  181 PIGKAIDCIA VFATVVGVST SLGLGATQIN GGLNYLFGIP NAFIVQLVLI IIVTVLFLLS 240
  241 AWSGLGKGIK YLSNTNMVLA GLLMLFMLVV GPTVLIMNSF TDSIGQYIQN IVQMSFRLTP 300
  301 NDPEKREWIN SWTIFYWAWW ISWSPFVGIF IARVSRGRTI REFLIGVLVT PCILTFLWFS 360
  361 IFGVSAMDLQ QKGAFNVAKL STETMLFGTL DHYPLTMVTS ILALILIAVF FITSADSATF 420
  421 VLGMQTSYGS LNPANSVKLS WGIIQSAMAA VLLYSGGLAA LQNTAILAAL PFSIVILLMI 480
  481 ASLYQSLSKE RREIKKAEKL DKPRSPRVKK AY