YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GERKA_BACSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFSKRKNN TDSKDKQNTD ERNQEQQQEK ERPVLISPSL AKNIAETKKE VGSSSDVIIR  60
   61 EIKIGEQDHV HLAVIYISGL VDNNTIHESL IDPLVQDESI QNTHAIQQIL EKTLPLGGVK 120
  121 AEKSWDKLFS ELMLGNALIF ADGHDEALIC STQGGEQRSI QEPSTQVSFR GPRQGFTESL 180
  181 QTNISMIRRY IKNPNLWVEK MKKGSVTNTD IALMYIQGIC DEKVLKEVKQ RLEKIDIDSI 240
  241 LESGYIEQLI EDETFTTFPT MYHTERPDVV AGNLLEGRFA IIVDGTPFVL IAPALFVQFF 300
  301 QSVEDYYSRF DIATSIRILR VLVFFISLVA PAVYVAATTF HQEMIPTQLL VVIAAQREIV 360
  361 PFPAVVEALT MEVAFEILRE AGVRLPRVVG SAVSIVGALV IGQAAVQAGI VSPAMVIIVA 420
  421 LTAIASFATP AFAMAISARL IRFIFIIASA VMGFYGLILG IIMMFVHLCS LRSFGVPYMS 480
  481 PLAPFSSQGV KDALFRVPWW ADEKRPESVS KEDKVRQGKD QRPEPAASRG MVNKDLEEGD 540
  541 QNGT

Type	Start	End	Confidence
Non-Cytoplasmic	1	279	0.53
Transmembrane Helix	280	300	0.64
Cytoplasmic	301	317	0.65
Transmembrane Helix	318	338	0.92
Non-Cytoplasmic	339	358	0.49
Transmembrane Helix	359	375	0.53
Cytoplasmic	376	384	0.78
Transmembrane Helix	385	406	0.86
Non-Cytoplasmic	407	413	0.67
Transmembrane Helix	414	436	0.89
Cytoplasmic	437	442	0.83
Transmembrane Helix	443	467	0.89
Non-Cytoplasmic	468	544	0.84