YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC19G7.17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	54	0.90
Non-Cytoplasmic	55	73	0.93
Transmembrane Helix	74	96	0.90
Cytoplasmic	97	116	0.93
Transmembrane Helix	117	139	0.85
Non-Cytoplasmic	140	146	0.79
Transmembrane Helix	147	168	0.94
Cytoplasmic	169	175	0.85
Transmembrane Helix	176	195	0.89
Non-Cytoplasmic	196	243	0.70
Transmembrane Helix	244	265	0.90
Cytoplasmic	266	284	0.59
Transmembrane Helix	285	312	0.73
Non-Cytoplasmic	313	363	0.50
Transmembrane Helix	364	383	0.92
Cytoplasmic	384	426	0.85
Transmembrane Helix	427	459	0.81
Non-Cytoplasmic	460	475	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGARFINFI KPLSSLLPEV EGPKTHLELV EKLGWMAGCV VVYQILSIIP VYGAEKTDTL  60
   61 DPINNFRVLD GSSASGLMIT GLAPIYLSSF LLQILASKKK IAVNFNLIID RVLFQNAQKV 120
  121 VSALLYLILA VTYVSSGYYG SFSDLGIFRF IMLILQIFLP GIVCIYLCEI IEKGHGLGSG 180
  181 PVLLLGSHIL GNIMWDVLSL HRYPVNESGD SQYQGALVGF AFNLFSFKNK FSSLRSILFR 240
  241 SEGLSFVQFL VCIAVFATFM YTLNIRIDVP IRSSRVRGVR QNFPLKLLYT SVIPLIYFYS 300
  301 ILSHLLVFAY ALYSLCPNSL ITRLLVQYSP IDTFAEHKLQ LVGGLVYFLY PPLGLSEALL 360
  361 HPVHTVIYTI TLICITIYFS LLWMNATAGG PRDVLLFFKE NQLVIAGYRE ATMLKELEKI 420
  421 IPIAAKLSAF FVSILSVIAG IFASTFGVGV LIASALVYAS FEMIVGANTS LGNGN