YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cca-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.90
Transmembrane Helix	130	150	0.58
Non-Cytoplasmic	151	172	0.63
Transmembrane Helix	173	195	0.78
Cytoplasmic	196	204	0.53
Transmembrane Helix	205	223	0.75
Non-Cytoplasmic	224	263	0.80
Transmembrane Helix	264	288	0.86
Cytoplasmic	289	390	0.99
Transmembrane Helix	391	412	0.87
Non-Cytoplasmic	413	428	0.85
Transmembrane Helix	429	451	0.94
Cytoplasmic	452	654	0.98
Transmembrane Helix	655	672	0.58
Non-Cytoplasmic	673	686	0.47
Transmembrane Helix	687	714	0.67
Cytoplasmic	715	774	0.55
Transmembrane Helix	775	798	0.86
Non-Cytoplasmic	799	860	0.73
Transmembrane Helix	861	885	0.87
Cytoplasmic	886	1118	0.90
Transmembrane Helix	1119	1137	0.77
Non-Cytoplasmic	1138	1152	0.63
Transmembrane Helix	1153	1178	0.74
Cytoplasmic	1179	1187	0.64
Transmembrane Helix	1188	1209	0.82
Non-Cytoplasmic	1210	1254	0.54
Transmembrane Helix	1255	1277	0.89
Cytoplasmic	1278	1312	0.56
Transmembrane Helix	1313	1328	0.43
Non-Cytoplasmic	1329	1358	0.80
Transmembrane Helix	1359	1381	0.91
Cytoplasmic	1382	1448	0.93
Transmembrane Helix	1449	1470	0.89
Non-Cytoplasmic	1471	1481	0.80
Transmembrane Helix	1482	1502	0.89
Cytoplasmic	1503	1511	0.82
Transmembrane Helix	1512	1532	0.80
Non-Cytoplasmic	1533	1581	0.81
Transmembrane Helix	1582	1602	0.87
Cytoplasmic	1603	1618	0.80
Transmembrane Helix	1619	1637	0.64
Non-Cytoplasmic	1638	1670	0.78
Transmembrane Helix	1671	1692	0.86
Cytoplasmic	1693	1844	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE  60
   61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR 120
  121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF 180
  181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP 240
  241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK 300
  301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE 360
  361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ 420
  421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC 480
  481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK 540
  541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN 600
  601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL 660
  661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF 720
  721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG 780
  781 LLVLFIFIFS TLGMVLFGCK FCNHPDTGLQ CTSAQVISSI CECDRMNFDN FLFATVTVFQ 840
  841 ILTQEDWNMV LFNGMAQTNP WAALYFVALM TFGNYVLFNL LVAILVEGFQ ESKEEEKRQL 900
  901 EEDARKQAVE EEDERKRELE LIIAKTTSPA FNNGVAPAEC TCQRPSSPEE SPSPRLLSAN 960
  961 YHPSPERKHS ANLDAIIDKR LVLRNSAPFD RSPVSEGRDD SRLNRHASLV LPVANGVPYR1020
 1021 RQRVHSWSGL CHHFNPNCPV HGRRALIETY AREKFLEASQ ELKQALAEEE KRNEAKQNTF1080
 1081 VRKLLKKTCL HNRTEFSLFL MGPKNPLRIK CLQTTQKKWF DYTVLFFIGI NCITLAMERP1140
 1141 SIPPDSFERQ FLHISGYIFT VIFTGEMMMK VIANGCFIGQ AAYFKDGWNI LDGILVVISL1200
 1201 INIAFELLAT GDSPKIFGVI RVLRLLRALR PLRVINRAPG VKLVVMTLIS SLKPIGNIVL1260
 1261 ICCTFFIIFG ILGVQLFKGM MYHCIGPEVG NVTTKADCIE DYRNKWVNHR YNFDNLGQAL1320
 1321 MSLFVLSSKD GWVSIMYQGI DAVGVDVQPI ENYNEWRMIY FISFLLLVGF FVLNMFVGVV1380
 1381 VENFHKCKEA LEKEMREKEK EKRLKRKLKR QKFEESMAGK RKKMERNYPY YHDYGHTRLF1440
 1441 LHGIVTSKYF DLAIAAVIGI NVISMAMEFY MMPMGLKYVL KALNYFFTAV FTLEAAMKLI1500
 1501 ALGFKRFFIE KWNRLDMFIV ILSIAGIIFE EFEALELPIN PTIIRVMRVL RIARVLKLLK1560
 1561 MAKGIRSLLD TVGEALPQVG NLGSLFFLLF FIFAALGVEL FGKLECSEDH PCDGLGEHAH1620
 1621 FKNFGMAFLT LFRIATGDNW NGIMKDALRD DCDSSDHCET NCCVDPILAP CFFVIFVLIS1680
 1681 QFVLVNVVVA VLMKHLEESN KRDAEGPAEP TGENIENEIT KSDDDEIVEE HEPLAIEHVK1740
 1741 EGELDEEEET EEGPTTQIPD GHGGIKRLSM QVLEQELIEV ERHLEERYRR ASECLGGELQ1800
 1801 PLNPGEIEDL DDPEFRPRSR SHRPRARTNS ALSNKSRGSH KSAL