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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cca-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE  60
   61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR 120
  121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF 180
  181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP 240
  241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK 300
  301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE 360
  361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ 420
  421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC 480
  481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK 540
  541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN 600
  601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL 660
  661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF 720
  721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG 780
  781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VTLGMVLFGC 840
  841 KFCNHPDTGL QCTSAQVISS ICECDRMNFD NFLFATVTVF QILTQEDWNM VLFNGMAQTN 900
  901 PWAALYFVAL MTFGNYVLFN LLVAILVEGF QESKEEEKRQ LEEDARKQAV EEEDERKREL 960
  961 ELIIAKTTSP AFNNGVAPAE CTCQRPSSPE ESPSPRLLSA NYHPSPERKH SANLDAIIDK1020
 1021 RLVLRNSAPF DRSPVSEGRD DSRLNRHASL VLPVANGVPY RRQRVHSWSG LCHHFNPNCP1080
 1081 VHGRRALIET YAREKFLEAS QELKQALAEE EKRNEAKQNT FVRKLLKKTC LHNRTEFSLF1140
 1141 LMGPKNPLRI KCLQTTQKKW FDYTVLFFIG INCITLAMER PSIPPDSFER QFLHISGYIF1200
 1201 TVIFTGEMMM KVIANGCFIG QAAYFKDGWN ILDGILVVIS LINIAFELLA TGDSPKIFGV1260
 1261 IRVLRLLRAL RPLRVINRAP GVKLVVMTLI SSLKPIGNIV LICCTFFIIF GILGVQLFKG1320
 1321 MMYHCIGPEV GNVTTKADCI EDYRNKWVNH RYNFDNLGQA LMSLFVLSSK DGWVSIMYQG1380
 1381 IDAVGVDVQP IENYNEWRMI YFISFLLLVG FFVLNMFVGV VVENFHKCKE ALEKEMREKE1440
 1441 KEKRLKRKLK RQKFEESMAG KRKKMERNYP YYHDYGHTRL FLHGIVTSKY FDLAIAAVIG1500
 1501 INVISMAMEF YMMPMGLKYV LKALNYFFTA VFTLEAAMKL IALGFKRFFI EKWNRLDMFI1560
 1561 VILSIAGIIF EEFEALELPI NPTIIRVMRV LRIARVLKLL KMAKGIRSLL DTVGEALPQV1620
 1621 GNLGSLFFLL FFIFAALGVE LFGKLECSED HPCDGLGEHA HFKNFGMAFL TLFRIATGDN1680
 1681 WNGIMKDALR DDCDSSDHCE TNCCVDPILA PCFFVIFVLI SQFVLVNVVV AVLMKHLEES1740
 1741 NKRDAEGPAE PTGENIENEI TKSDDDEIVE EHEPLAIEHV KEGELDEEEE TEEGPTTQIP1800
 1801 DGHGGIKRLS MQVLEQELIE VERHLEERYR RASECLGGEL QPLNPGEIED LDDPEFRPRS1860
 1861 RSHRPRARTN SALSNKSRGS HKSAL

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