YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35917
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	99	0.89
Transmembrane Helix	100	119	0.75
Non-Cytoplasmic	120	123	0.66
Transmembrane Helix	124	145	0.76
Cytoplasmic	146	165	0.80
Transmembrane Helix	166	186	0.85
Non-Cytoplasmic	187	191	0.52
Transmembrane Helix	192	209	0.91
Cytoplasmic	210	216	0.84
Transmembrane Helix	217	238	0.91
Non-Cytoplasmic	239	244	0.77
Transmembrane Helix	245	264	0.87
Cytoplasmic	265	295	0.81
Transmembrane Helix	296	310	0.73
Non-Cytoplasmic	311	313	0.37
Transmembrane Helix	314	333	0.42
Cytoplasmic	334	346	0.48
Transmembrane Helix	347	368	0.85
Non-Cytoplasmic	369	397	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRHILMCS RVGFTPSTSQ AVFHTSAVNS VLPRAKPLDE EMPLASPKKP RPDTQILDLS  60
   61 GKRHKKDIDI IVGDQYLQQW YKMETKNLAA DYLALCKSKL SLFVASTATC GVLMAPVPVA 120
  121 ADSLIAATVG TFLLSSAANA CNQLLEAPYD AQMRRTQTRV LVVHRFSPLH AFTFAGVTGL 180
  181 TGIGLLAYYA NPLAAALGAL NWFIYAGVYT PMKRSHIGCT WAGAVVGAIP PLMGYAAATG 240
  241 YLDPAAWCLA TILFSWQFPH FNGLSWNLRG DYSKAGYRVM CVTNERLCRV TSLRHSVALL 300
  301 GLCSIAAPLT DLTTLTFAID SLPVNAYLVY LSYKFYKAPD AKNSRKLFFY SLLHLPLVML 360
  361 LMGISNYGRN EQQKEHISDR ISNGYNKMVD SVKSFSL