YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35858
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSLPNYD RTSDDVDASK EVVDTPIQTI SSSHVSFQIT TDPVPSMDYL SIHEDDTSMS  60
   61 SSERTIERGF SRYGRKRSSV RMLLDEVNMT DRKTSWMDTE HRVILNVGGI RHETYSHVLK 120
  121 KIPATRLSRL TPNLANYDPV LNEYFFDRHP GVFSMILNYY RTGKLHYPTN VCGPLFEEEL 180
  181 EFWGLDANQV EPCCWMTYTQ HRDTQDTLAV IESLDLDGDP PTQEEIAKKF GWEDDYYTGN 240
  241 MSQWQRLKPR VWALFDEPWS SKYARVISVV NIIFVIISIV CFCLKTHPSF RIPDIDISTT 300
  301 MGNFSAPLNG VQMNNIYVGK TATRAHPSFF YVELLSNIWF SGEFLTRMVF CPNVATFLRT 360
  361 PVNLIDFIAT VSFYIDWALD RTLSGSNRDS VEFFSIIRIL RLFKLTQHST GLKILIQTFK 420
  421 ASAQELFLLV FFVLLGIVIF AALVYYAERV EHNEENQFSS IPVGLWWAVI TICTIGFGDL 480
  481 VPQTSLGRLV GSVCALMGVL TIALPVPVIV SNFAMFYSHA QARSKLPKKR RRVLQPHEIK 540
  541 PVVGRSTTAV MISALTQRGP VSGGGSNPSD GGPLSAFSNN TPLLVCPPDG STKPKKLSQN 600
  601 KNGGTTPIQN NGSKASKLI

Type	Start	End	Confidence
Non-Cytoplasmic	1	262	0.70
Transmembrane Helix	263	284	0.66
Cytoplasmic	285	354	0.46
Transmembrane Helix	355	369	0.27
Non-Cytoplasmic	370	425	0.60
Transmembrane Helix	426	447	0.94
Cytoplasmic	448	457	0.64
Transmembrane Helix	458	481	0.82
Non-Cytoplasmic	482	492	0.52
Transmembrane Helix	493	520	0.78
Cytoplasmic	521	619	0.62