YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35615
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.92
Transmembrane Helix	31	52	0.78
Non-Cytoplasmic	53	88	0.90
Transmembrane Helix	89	109	0.91
Cytoplasmic	110	118	0.83
Transmembrane Helix	119	138	0.94
Non-Cytoplasmic	139	150	0.68
Transmembrane Helix	151	171	0.84
Cytoplasmic	172	182	0.74
Transmembrane Helix	183	204	0.91
Non-Cytoplasmic	205	211	0.66
Transmembrane Helix	212	230	0.95
Cytoplasmic	231	269	0.92
Transmembrane Helix	270	293	0.84
Non-Cytoplasmic	294	313	0.88
Transmembrane Helix	314	333	0.93
Cytoplasmic	334	339	0.90
Transmembrane Helix	340	359	0.93
Non-Cytoplasmic	360	367	0.80
Transmembrane Helix	368	387	0.94
Cytoplasmic	388	405	0.84
Transmembrane Helix	406	428	0.90
Non-Cytoplasmic	429	438	0.89
Transmembrane Helix	439	460	0.95
Cytoplasmic	461	502	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTGGHMPR IRLRNDVSSS SFWTRITGQK WSKHHVFIFV HTFMSYAMLH ATRKTLSTVK  60
   61 PSLIHTWISN TSTPDGPVFP SQQAAAEFLG VLDTGFLVAY AIGLYICGIL GDNYNPRRLL 120
  121 TAGMMLSSII VFCFGYLTET FHFYSPMVYS FLWILNGFIQ SVGWPVEVSI MGNWFGHNAR 180
  181 GAVMGAWSSC ASVGNIIGTL IASYTLFLGY QYSFLIACSL LFIYSFLVFF QLPSAPWEVS 240
  241 SDILPEQMEE EETDDEPTER PPPIGFLKAW LLPGVIAYSL AYACLKLVNY GFFFWLPYYL 300
  301 HAGLHWPESY ADSLSTWYDV GGIVAAVLAG AFSDHMRSRT PVVFIMLLMA TVSLYIYAHS 360
  361 PESYNWNAFL LLVAGFFIGG PANMISSSIT ADLGKCDQLR GNAEALSTVT GIIDGTGSIG 420
  421 AAIGQWFIPS VQHWFGWDAV FYGFIVMILC TALCLVPVLW KEHKERRIHR SEEVDSLLQS 480
  481 DSDENLADDI QEIRRRPTNA IV