YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35436
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	74	0.90
Non-Cytoplasmic	75	95	0.93
Transmembrane Helix	96	119	0.86
Cytoplasmic	120	127	0.78
Transmembrane Helix	128	148	0.94
Non-Cytoplasmic	149	157	0.83
Transmembrane Helix	158	177	0.95
Cytoplasmic	178	195	0.85
Transmembrane Helix	196	218	0.93
Non-Cytoplasmic	219	224	0.90
Transmembrane Helix	225	247	0.93
Cytoplasmic	248	283	0.98
Transmembrane Helix	284	307	0.89
Non-Cytoplasmic	308	320	0.88
Transmembrane Helix	321	344	0.88
Cytoplasmic	345	350	0.79
Transmembrane Helix	351	372	0.86
Non-Cytoplasmic	373	385	0.88
Transmembrane Helix	386	409	0.86
Cytoplasmic	410	424	0.83
Transmembrane Helix	425	446	0.91
Non-Cytoplasmic	447	451	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIRDYESIS PVDPPPLYTQ DQNTEDLASI VDGADSSDEH NELIPEDKGR IVFWIILLNG  60
   61 IGVLLPWNMF ITIAPQYYVD YWFTVNGTAT HYADSFQSAM GVVAQVPNLI VAIINVLNLI 120
  121 RGPLLYRVLA PLAFNSLLIV IILALVIFQQ PSDQARNWFY IVSLIIVMAM NASNGLYQNS 180
  181 FFGMAADFPA KYSNAVVIGT NICGTFTSVL AIVATLAFST QAETVALIYF GISLLILFVC 240
  241 LVSWWFCKKM DFYKYYVSKG NRLRAAQEQS SFDYRPYLET IKYCWLQCIC VFLVYFVSLS 300
  301 VFPTVLAGFQ PGYTVFPNDV YAGIAVFLNF NFFAAVGNVA ATFVTFPGPR LLIVPCVIRL 360
  361 LFIPFFMFSN YLPHSRTMGV LFTNEWIFFF GNTLLAFTSG YFSSLGMMYT PRVCPPEYSK 420
  421 LAGQVSALSL VLGITAGVSF TYAITAMVNN F