YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35435
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.99
Transmembrane Helix	45	68	0.90
Non-Cytoplasmic	69	89	0.93
Transmembrane Helix	90	113	0.86
Cytoplasmic	114	121	0.78
Transmembrane Helix	122	142	0.94
Non-Cytoplasmic	143	151	0.83
Transmembrane Helix	152	171	0.95
Cytoplasmic	172	189	0.85
Transmembrane Helix	190	212	0.93
Non-Cytoplasmic	213	218	0.90
Transmembrane Helix	219	241	0.93
Cytoplasmic	242	277	0.98
Transmembrane Helix	278	301	0.89
Non-Cytoplasmic	302	314	0.88
Transmembrane Helix	315	338	0.88
Cytoplasmic	339	344	0.79
Transmembrane Helix	345	366	0.86
Non-Cytoplasmic	367	379	0.88
Transmembrane Helix	380	403	0.86
Cytoplasmic	404	418	0.83
Transmembrane Helix	419	440	0.91
Non-Cytoplasmic	441	445	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEFVDPPP LYTQDQNTED LASIVDGADS SDEHNELIPE DKGRIVFWII LLNGIGVLLP  60
   61 WNMFITIAPQ YYVDYWFTVN GTATHYADSF QSAMGVVAQV PNLIVAIINV LNLIRGPLLY 120
  121 RVLAPLAFNS LLIVIILALV IFQQPSDQAR NWFYIVSLII VMAMNASNGL YQNSFFGMAA 180
  181 DFPAKYSNAV VIGTNICGTF TSVLAIVATL AFSTQAETVA LIYFGISLLI LFVCLVSWWF 240
  241 CKKMDFYKYY VSKGNRLRAA QEQSSFDYRP YLETIKYCWL QCICVFLVYF VSLSVFPTVL 300
  301 AGFQPGYTVF PNDVYAGIAV FLNFNFFAAV GNVAATFVTF PGPRLLIVPC VIRLLFIPFF 360
  361 MFSNYLPHSR TMGVLFTNEW IFFFGNTLLA FTSGYFSSLG MMYTPRVCPP EYSKLAGQVS 420
  421 ALSLVLGITA GVSFTYAITA MVNNF