YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35433
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLFNLLI AGWVYSQCPT LQLQEPCTCT STRYEAVSIN CDGGSSLDAV LESLSNSPQA  60
   61 IDSLTISNTP IEKMPGYAFQ GFQIKKLFLR NNGLRSFHPN TFTGNLENSL EELEIRGNYI 120
  121 DGIPQSGVSI LKQLKILSLP DNLIEYVQDN AFLSYHSRDS LLKLDLSANN LTAIHPTGLL 180
  181 GLENLSQLSL DKNLLSEIPS QALENIPSLE DLSLGVNRIH TISRNSLPLP NLKSLSLEVN 240
  241 QIRLIPSDSF SETPLLSYLY LGNNLLTSID ASMFLHIGGL KVLSMSNNKD ITSIQANGKL 300
  301 SVQQFKLCIC ILAFQHAPSL IRLELFDCSI SRIEPKSLQK VQHIQVILLS RNQITQINAV 360
  361 DDFAFSQLPM LTSLDLSSNR LESLPSNVIY DSLMQKKTSP VQRKLSIQNN PWRCDKDLMW 420
  421 LRKWLRDNGD VTTAASNSPP AKCWTPSNLS GLDLRQTDSK LPHKTTKPPV DQFQYKNQQV 480
  481 TNSNGTSQLG YQNPHTEVNG LALVGLILGI VLVVFVSCII LGYLMRFIFL SYEAKTKPNV 540
  541 FGSTISSSGC IRNMYGGDGT LVSEDHGHPS SANNNVYLNR PRHWWF

Type	Start	End	Confidence
Signal Peptide	1	16	0.97
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	500	0.99
Transmembrane Helix	501	525	0.90
Cytoplasmic	526	586	0.95