YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35349
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.90
Non-Cytoplasmic	31	40	0.69
Transmembrane Helix	41	63	0.88
Cytoplasmic	64	69	0.83
Transmembrane Helix	70	87	0.95
Non-Cytoplasmic	88	93	0.71
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	121	0.81
Transmembrane Helix	122	140	0.95
Non-Cytoplasmic	141	153	0.75
Transmembrane Helix	154	178	0.79
Cytoplasmic	179	189	0.78
Transmembrane Helix	190	211	0.88
Non-Cytoplasmic	212	220	0.72
Transmembrane Helix	221	239	0.96
Cytoplasmic	240	245	0.83
Transmembrane Helix	246	267	0.86
Non-Cytoplasmic	268	275	0.60
Transmembrane Helix	276	295	0.83
Cytoplasmic	296	302	0.72
Transmembrane Helix	303	326	0.86
Non-Cytoplasmic	327	347	0.70
Transmembrane Helix	348	373	0.79
Cytoplasmic	374	383	0.66
Transmembrane Helix	384	405	0.89
Non-Cytoplasmic	406	409	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEFLFISLL WLFKPIYFLL FTVMFSFLIF NNFSWGGLFL VLDSYSFILL IVMSLFILGI  60
   61 IVISEKNNNL LILSEILVFI CIIFFIPSNM MMLYMFFELS MFPILVMILG YGSQIEKINS 120
  121 SYYLMFYAAF CSFPFLFVYF KSNFLLVFTY YNFVISWEMF FILSLSFMMK FPIYFLHLWL 180
  181 PKAHVEAPTT ASMLLAGLLL KLGTAGFLRI LGSLSFVHNN VWILIAFLGM ILGSFCCVFQ 240
  241 SDSKALAAYS SVTHMSFLLL SLVFITMSSK ISSVMLMLAH GYTSTLMFYL IGEFYHTSGS 300
  301 RMIYFMSSFF SSSMIMGILF SVVFLSNSGV PPSLSFLSEF LVISNSMLIS KSMFVMIFIY 360
  361 FVVSFYYSLF LITSSLMGKG YHNFNTWNVG FSAPLVLMMY NVFWLSVFY