YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35254
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.90
Non-Cytoplasmic	31	61	0.96
Transmembrane Helix	62	84	0.92
Cytoplasmic	85	92	0.90
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	120	0.83
Transmembrane Helix	121	142	0.92
Cytoplasmic	143	153	0.84
Transmembrane Helix	154	177	0.89
Non-Cytoplasmic	178	183	0.88
Transmembrane Helix	184	205	0.93
Cytoplasmic	206	268	0.98
Transmembrane Helix	269	292	0.91
Non-Cytoplasmic	293	306	0.90
Transmembrane Helix	307	327	0.93
Cytoplasmic	328	334	0.91
Transmembrane Helix	335	357	0.93
Non-Cytoplasmic	358	364	0.82
Transmembrane Helix	365	390	0.88
Cytoplasmic	391	403	0.90
Transmembrane Helix	404	425	0.87
Non-Cytoplasmic	426	432	0.85
Transmembrane Helix	433	454	0.93
Cytoplasmic	455	515	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEAPSFRMI CVAVITSIAG SFHFGFNLVL TNPSQEAFLN FMNQTLAKRF DGGLSDNTLQ  60
   61 NIWSFVVAIL FLGALAGSFS IRLIADWIGR KNGLYISIAV GVLAGGMSIA SKFIPLFELY 120
  121 IASRIVMGWS VSVSLGLSAL FLSEASPKQN RGAIGMMTGT CVQLGTVCGS VIAMPQIFGT 180
  181 EDLWWLIYAT EIGIMLFFGA ALPFFPESPG FLIQRGATEA ATKSIAYYYN CEIDEAEKHL 240
  241 NEIKEEQKNS TKNFKMMDIV RKKSLRDKAF IGVVVTFAMS FSGVAVINAF AFDILKDTGL 300
  301 KVLEASLAND AISVVSMISS IVAAVIVDRN GRRPLLLISF AGILVCNLII FALMFTFYKF 360
  361 ENHVLGFILI CFICIFTFFF ALGPGPLCYF INAELVGQAA RSAAQSWASV IQMLSRFVIV 420
  421 TAFLPMKNQL GEAWSYLILF VAPVAASLVY LYFSLPETKN KNPFEVEEAI EDLPKFPLCG 480
  481 KNRVYDRKQS QEMVLSRQMQ LVVDYGSIES LSYRL