YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE35207
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	47	0.93
Non-Cytoplasmic	48	65	0.91
Transmembrane Helix	66	88	0.91
Cytoplasmic	89	107	0.97
Transmembrane Helix	108	129	0.92
Non-Cytoplasmic	130	134	0.75
Transmembrane Helix	135	153	0.93
Cytoplasmic	154	163	0.80
Transmembrane Helix	164	186	0.91
Non-Cytoplasmic	187	202	0.90
Transmembrane Helix	203	221	0.95
Cytoplasmic	222	310	0.97
Transmembrane Helix	311	332	0.67
Non-Cytoplasmic	333	337	0.59
Transmembrane Helix	338	352	0.39
Cytoplasmic	353	361	0.51
Transmembrane Helix	362	384	0.89
Non-Cytoplasmic	385	415	0.53
Transmembrane Helix	416	436	0.76
Cytoplasmic	437	449	0.69
Transmembrane Helix	450	472	0.91
Non-Cytoplasmic	473	477	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTPVILSD ITTTISGVIG DFDQSSVLWA LIVGIILAFL LGNGMGANDV SNAFGTSVGS  60
   61 GVLTMVQAYI LASIFEALGS ILVGWSVADT MRKGVVDTSQ YADDPKELLL GQVAILGGCA 120
  121 AWLLIATVLH MPVSTTHSLV GATIGFSIVL RGLEGIQWMT IVRIVCSWFL SPILSGIISS 180
  181 IIYMIVDHTV LRTGDPLKNG LRALPVFYFV CMAFNALVVF WDGSKRFQEL NQISKVCQLS 240
  241 ILGHYQFLGS KVQSTPSRFS DVESANDSEK LKGLPEQKLQ NVQQRKTPSG KIRKFYVWLL 300
  301 PDRTRVDGRN ITKLFSTIQV FTACFAGFAH GANDVSNAIA PLAAIISIYR TKSVEQTESV 360
  361 PIYVLLYGVF AICVGLWLFG HYVIKTVGTN MSEINPASGF TIEFGAAMTS LLASKVGLPL 420
  421 STTHCLVGSV VAVGMIRSEN GVKWSIFRDI AISWVVTLPV SGLISAGIMF VIKWAVL