YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pgp-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.94
Transmembrane Helix	73	97	0.90
Non-Cytoplasmic	98	119	0.89
Transmembrane Helix	120	142	0.91
Cytoplasmic	143	203	0.95
Transmembrane Helix	204	225	0.82
Non-Cytoplasmic	226	308	0.86
Transmembrane Helix	309	330	0.89
Cytoplasmic	331	339	0.78
Transmembrane Helix	340	361	0.87
Non-Cytoplasmic	362	758	0.57
Transmembrane Helix	759	778	0.77
Cytoplasmic	779	832	0.82
Transmembrane Helix	833	853	0.87
Non-Cytoplasmic	854	857	0.64
Transmembrane Helix	858	878	0.86
Cytoplasmic	879	941	0.78
Transmembrane Helix	942	965	0.80
Non-Cytoplasmic	966	972	0.65
Transmembrane Helix	973	993	0.68
Cytoplasmic	994	1270	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAPPKKLLK LFPTFFRMHQ NLNFTIILPS SRFSATLLRK LHFFITYKQI HYLKRLESED  60
   61 LDLINFAKKS DLIFIITALI CALLGGTIQP VVLLIGGWIT DLYLTNGNTA GNDEFLYSVL 120
  121 TLIYAGLGFG VIILVLALIQ GVCIQRGTSR ILDSIRKEFL GAVLRQDANW LDKHSSGSIT 180
  181 CQLNENIEVI SDGLGNKCCM LVRGFAMFTS SIIACAFINW QLTFITFTMG PVSAFVLHLL 240
  241 TKVNEVSNEE LMSLSAQSHA IIEESILNVR TVQSCNGQNF MITKLNQVNE KIKKFYNKST 300
  301 FWAGFFDGLA LFVIYFITGI SLFFGCRLYF NQEIGKAGDV ILIVNTICVT GYFLGLLGPH 360
  361 MSSLQQAATS FLLLYKTIES APKSEGKEGE IKISSTRGNI EFRDVRFKYF TRDNEVLQGL 420
  421 SLQVLPGQTV ALVGTSGCGK STSIGLLTKL YRASEGEILI DGKNIDMLDA KSLRQQIGIV 480
  481 QQEPKLFDGT IMENIKLGRN VDEETIKTAA DIANASSFIE KLENGYETRL GPGGVQLSGG 540
  541 QKQRICIARA LVTSPSILLL DEATSALDSH NEHIVNKALT KASEGRTTII IAHRLSSLKS 600
  601 VDRIYVLDQG KTKEIGTHDE LILLGGIYAR LAKSQEVEQS SKKDWEREEL RRAEKMKKKG 660
  661 RTVEIIEPNS TILQEHEHNF VGSVITENEE QKISFSGISK LFNYLPKHRK TLILIIALLI 720
  721 PRAIELCSYG IGMSFAFKTL QRSKDDYMTW NYITLAQQTL AGITFWILHT SLMYLCGWLA 780
  781 NEVMNEVKQE MLSEVLNKPI PYFDNPETSP SACVSRIISH AHNCYACLDH RAIRFVWFIA 840
  841 GTIFSLLLAF PFVWELGVLG LGITILLTIF SLHFVSVAHR AHSEKSVMDK SGEFAVEIVE 900
  901 HIRAIKLLAV EGYFENKFSE YLKTSEIYEN KIGFVSSLNF AITQSYVFAC DMLLFFVGTL 960
  961 LIYHGRYSPD KVFLAFNGAQ MSAWGVMYFS PWFPEIVRGS ASANQIFSFF DKNRTNSTSG1020
 1021 LSKPEINGKV EVSDVTFAYP STPHRNVCEG FSLNIPKGHS IALVGASGCG KSTIISMLER1080
 1081 FYSAKAGRIS VDDNDIDGID VNHLRNNISV VGQEPVLFNA TIRENITIGI DEVSVEEVQK1140
 1141 ACKAANAAGF IESFPLGYDT IVGEGGASLS GGQKQRIAIA RAIIRKPKIL LLDEATSALD1200
 1201 TQSEEIVQKA LRSATTGRTS IIVAHRLSTV QHCDTIYYIS RGAVAEYGTH AELVAMDSKY1260
 1261 ARLVAAQSLS