YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	40	0.72
Transmembrane Helix	41	63	0.87
Cytoplasmic	64	80	0.86
Transmembrane Helix	81	107	0.72
Non-Cytoplasmic	108	135	0.84
Transmembrane Helix	136	153	0.94
Cytoplasmic	154	165	0.77
Transmembrane Helix	166	188	0.87
Non-Cytoplasmic	189	204	0.92
Transmembrane Helix	205	227	0.88
Cytoplasmic	228	243	0.89
Transmembrane Helix	244	267	0.87
Non-Cytoplasmic	268	291	0.96
Transmembrane Helix	292	317	0.84
Cytoplasmic	318	339	0.91
Transmembrane Helix	340	359	0.88
Non-Cytoplasmic	360	366	0.80
Transmembrane Helix	367	388	0.91
Cytoplasmic	389	399	0.92
Transmembrane Helix	400	420	0.93
Non-Cytoplasmic	421	426	0.81
Transmembrane Helix	427	448	0.90
Cytoplasmic	449	483	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKEDNKIG LIGATSYIVG SIIGSGIFIA PKGIVEHAGS VGLSLIIWVF CALLNMITAI  60
   61 NYIELGTSIP ESGADLAYID YMGWTPIAFS LLWLSLLIQS SSSAAVLYLT FGKYLVQALE 120
  121 PIVCFTSSGA DNCAKLFGFG LLLFLTLTNM FSLNKFAARV QIISMCSKIF ATLIIIGIGF 180
  181 FFIIFRGATS HYRSSEIMKG SDWNAGAIAL AIYQGNWAFG GFTTLNYGTE EIQIENFRKT 240
  241 LPRACLGGLL ISAVIYVLVN VSYFAILTPQ EIIDSSAVAT TFIQRTVGNG PAFAVPAVVG 300
  301 FLLVGTLNGD VFGWSRYMVA GSRRKMMPTC FSLIHVDNDS PRVSVFFHTL TSIIFAFMGD 360
  361 TDQLVDYLTV TGMLTTIFAL LVLVIIKWKK MPIASDPVKY SIFWPILNLV IMIALLVIPI 420
  421 QQDPLSSIIG FSMFLGGVVV YFIIKFVVSH TEFLGVIDEK LTHLCQILTW TIVDSGPEEK 480
  481 TRL